SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene139

Length: 2062 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene139
CTAAAGCTTACTCGTGACCTTGTCTGCTGTTTAGTATTGCAGGTTCTCTGATATTTAATTAATCGATTGCCAATGGCGCAGCTGCACAGCCCCGCAGATATACATGTGCCACACCGTAATCAAGTGGCCAGCGACGCCACGTTGCACGAGCCTGGCGCTCTTAAGAGCAACGATGTGATCCAGATATCCAAGCAGATCATTAATTTGGGACAACTAGAGACAGGTTCCATAGAAGTTTGCCTCTGTGACGCGGGGACTACACCCGTGGGCTTTAAAAAGAATCAGGAGGCCAAATCCGACGACGCCAGTGGTCATGGCCATTTCTCCAAGGCCAACAGCTCCTTCATGCATTCAACGATCAATGTCGTTGGCATCATGATAGGTCTGGGACAGCTTTCAACTCCCTACGCTCTGGAAAAGGGAGGGTGGATGAGCGGCTTCCTGCTGGTGGGTCTGGGAGTACTATGTGCCTACACAGCAAACGCCATGGGGAAGTGTCTTCGATCCAGCTCCGGGGTGAACAACTACCAAGACCTGGGGGAAAGGGCATTCGGCAGAGCGGGCAGAATAATCGTATCAACATTTCTGTACTTGGAGATATTCCTAGCGCTGGTGAGCTACACCATCTCACTGGGAGACAACCTGAACACCATATTCTCCCACGCCAACCACCTCAGCTTCGGCTTTTCGTGGATGCACCTATCCGCCCAACGCTTTCTCACTGTAATCGCAGTGGTTATGGCGTTGCCCAGCCTTTGGCTGCGAGACCTTAGCTCCATATCCTTCCTTTCCTCGGGCGGAATCGTCATGTCTCTCCTGCTCGTCTTCACCGTCGCTTGGACAGCCGCATTCGGTGGCGTGGGGGTCTCGCACCGCCTCCCCGCCCTTAATATGACCAACGTCCCTGAGATCTCCGGCCTCTACGTCTTTAGCTATGGAGGACACGTCGTATTCCCCAATATATACAAAGCCATGAAGGATCCCTCTCAATTTTCCAAGGTGGTGGCGGTGAGTTTTTCTATGATCACAGTGGTGTACACAGGCCTGGCCTTCATGGGCGCCACGATGTTCGGATCAGATATAAAGTCGCAGATAACCCTGAACATGCCAAGGCACCTGGTAGTGACTAAGATAGCACTGTGGGCGACTGTAATAACGCCCATGACAAAATACGCCCTGGAGCTCAGCCCGGTGGCAATGCAGATGGAAAGCGTCCTCCCAAAGTCCATGGGCTCAAAATCCCGAATGGTTGTCAGGGCGACCATAAGCTCCATTCTTCTCATCATCATTCTGGCCATGGCTCTCACACTGCCCTACTTCAGCTACATCCTGGCGCTCACAGGCTCTCTCCTCAGCACCTGCATTTCCATCGTTTTTCCCTGCGCTTTCTATATCAAGATCTGCCGCTCCAACGTCACCAGGCCTGGGCTTGCCTTGAATATCGCTTTCATAGCGCTGGGCATTTTCTTGGGAGTCGTGGGTACCATTTCTTCCGTTCGCTCCCTGGTAAAAAGCGTGAGCGAGTCGCATCGGTGACTCAAGGGGGCCTAATTTTATGGGTTGAGATGAAAACAAATTGGTCTACGAGCGCCAGCTGCGCACGTTTATTATGAGTGCATTGCCTATTGCCTTAGAAACTCCAAAATTTTGGAGCCTTTCCTGCTGTAATTTTATTTGCGTCACTGAATATTATATTGCGAGTCCAAACTGGTGGCTAGGTCTTTCACGCAATGGAGCTTGTGTGGGTAGGGCTGCTGACGTGAACCAATAACCTCATGCTTAGCATAAGTTAGATGGTGTTAGAGTGAAATTTGCACAAATTCAACGGCAAGAAAATTCATGGAATGGTATGGTGGGTGCATGTGTAAAGAAAATAATATTGGACAACCAGAACTGAACTCGCGGTCGCGGTCGATTTATACTGTATTGTAATTCAAGGCGATTATGCCAACCATAATTCCTTGGCCATCATTCTAGTAGCCAGGTGATTCGATTTGGTCACATACAAAAGCTTATTGAATAAAAGCTCCTTTCTGAAATTTAATGAAAGCACGATTACAGT

Ace file of the UniGene sp_v2.0_unigene139

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter family protein, putative n=3 Tax=Oryza sativa RepID=Q53MQ4_ORYSJ	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	amino acid transporter	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	amino acid transport	GO:0006865	Biological Process	70%
Blast2go	amino acid transmembrane transporter activity	GO:0015171	Molecular Function	70%
Blast2go	membrane	GO:0016020	Cellular Component	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A864

Fln msg: your sequence is longer than subject: 488 - 161

Fln protein: MAQLHSPADIHVPHRNQVASDATLHEPGALKSNDVIQISKQIINLGQLETGSIEVCLCDAGTTPVGFKKNQEAKSDDASGHGHFSKANSSFMHSTINVVGIMIGLGQLSTPYALEKGGWMSGFLLVGLGVLCAYTANAMGKCLRSSSGVNNYQDLGERAFGRAGRIIVSTFLYLEIFLALVSYTISLGDNLNTIFSHANHLSFGFSWMHLSAQRFLTVIAVVMALPSLWLRDLSSISFLSSGGIVMSLLLVFTVAWTAAFGGVGVSHRLPALNMTNVPEISGLYVFSYGGHVVFPNIYKAMKDPSQFSKVVAVSFSMITVVYTGLAFMGATMFGSDIKSQITLNMPRHLVVTKIALWATVITPMTKYALELSPVAMQMESVLPKSMGSKSRMVVRATISSILLIIILAMALTLPYFSYILALTGSLLSTCISIVFPCAFYIKICRSNVTRPGLALNIAFIALGIFLGVVGTISSVRSLVKSVSESHR*

Protein Length: 489

Fln nts: CTAAAGCTTACTCGTGACCTTGTCTGCTGTTTAGTATTGCAGGTTCTCTGATATTTAATTAATCGATTGCCA_-_ATGGCGCAGCTGCACAGCCCCGCAGATATACATGTGCCACACCGTAATCAAGTGGCCAGCGACGCCACGTTGCACGAGCCTGGCGCTCTTAAGAGCAACGATGTGATCCAGATATCCAAGCAGATCATTAATTTGGGACAACTAGAGACAGGTTCCATAGAAGTTTGCCTCTGTGACGCGGGGACTACACCCGTGGGCTTTAAAAAGAATCAGGAGGCCAAATCCGACGACGCCAGTGGTCATGGCCATTTCTCCAAGGCCAACAGCTCCTTCATGCATTCAACGATCAATGTCGTTGGCATCATGATAGGTCTGGGACAGCTTTCAACTCCCTACGCTCTGGAAAAGGGAGGGTGGATGAGCGGCTTCCTGCTGGTGGGTCTGGGAGTACTATGTGCCTACACAGCAAACGCCATGGGGAAGTGTCTTCGATCCAGCTCCGGGGTGAACAACTACCAAGACCTGGGGGAAAGGGCATTCGGCAGAGCGGGCAGAATAATCGTATCAACATTTCTGTACTTGGAGATATTCCTAGCGCTGGTGAGCTACACCATCTCACTGGGAGACAACCTGAACACCATATTCTCCCACGCCAACCACCTCAGCTTCGGCTTTTCGTGGATGCACCTATCCGCCCAACGCTTTCTCACTGTAATCGCAGTGGTTATGGCGTTGCCCAGCCTTTGGCTGCGAGACCTTAGCTCCATATCCTTCCTTTCCTCGGGCGGAATCGTCATGTCTCTCCTGCTCGTCTTCACCGTCGCTTGGACAGCCGCATTCGGTGGCGTGGGGGTCTCGCACCGCCTCCCCGCCCTTAATATGACCAACGTCCCTGAGATCTCCGGCCTCTACGTCTTTAGCTATGGAGGACACGTCGTATTCCCCAATATATACAAAGCCATGAAGGATCCCTCTCAATTTTCCAAGGTGGTGGCGGTGAGTTTTTCTATGATCACAGTGGTGTACACAGGCCTGGCCTTCATGGGCGCCACGATGTTCGGATCAGATATAAAGTCGCAGATAACCCTGAACATGCCAAGGCACCTGGTAGTGACTAAGATAGCACTGTGGGCGACTGTAATAACGCCCATGACAAAATACGCCCTGGAGCTCAGCCCGGTGGCAATGCAGATGGAAAGCGTCCTCCCAAAGTCCATGGGCTCAAAATCCCGAATGGTTGTCAGGGCGACCATAAGCTCCATTCTTCTCATCATCATTCTGGCCATGGCTCTCACACTGCCCTACTTCAGCTACATCCTGGCGCTCACAGGCTCTCTCCTCAGCACCTGCATTTCCATCGTTTTTCCCTGCGCTTTCTATATCAAGATCTGCCGCTCCAACGTCACCAGGCCTGGGCTTGCCTTGAATATCGCTTTCATAGCGCTGGGCATTTTCTTGGGAGTCGTGGGTACCATTTCTTCCGTTCGCTCCCTGGTAAAAAGCGTGAGCGAGTCGCATCGGTGA___CTCAAGGGGGCCTAATTTTATGGGTTGAGATGAAAACAAATTGGTCTACGAGCGCCAGCTGCGCACGTTTATTATGAGTGCATTGCCTATTGCCTTAGAAACTCCAAAATTTTGGAGCCTTTCCTGCTGTAATTTTATTTGCGTCACTGAATATTATATTGCGAGTCCAAACTGGTGGCTAGGTCTTTCACGCAATGGAGCTTGTGTGGGTAGGGCTGCTGACGTGAACCAATAACCTCATGCTTAGCATAAGTTAGATGGTGTTAGAGTGAAATTTGCACAAATTCAACGGCAAGAAAATTCATGGAATGGTATGGTGGGTGCATGTGTAAAGAAAATAATATTGGACAACCAGAACTGAACTCGCGGTCGCGGTCGATTTATACTGTATTGTAATTCAAGGCGATTATGCCAACCATAATTCCTTGGCCATCATTCTAGTAGCCAGGTGATTCGATTTGGTCACATACAAAAGCTTATTGAATAAAAGCTCCTTTCTGAAATTTAATGAAAGCACGATTACAGT

Fln Alignment:

Contig139___VVYTGLAFMGATMFGSDIKSQITLNMPRHLVVTKIALWATVITPMTKYALELSPVAMQMESVLPKS--------MGSKSRMVVRXXXXXXXXXXXXXXXXXXPYFSYILALTGSLLSTCISIVFPCAFYIKICRSNVTRPGLALNIAFIALGIFLGVVGTISSVRSLVKSV
D5A864_____________MIYGGIAVMGYMMFGNELESQVTLNLPRTLVASKVAIYITLINPFAKFSLTITPLATALEELLPSSDSWLVLWGIGIRTLLVI----------STVAVALALPFFGYLMALIGSSLSCSVSIIIPSICYLKLFGASISRHEMSLIFIILILGIVTGIVGTYSSLQKIADAI

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
570	88		11		0.923564
1294		75		25	1.0
1389		36		63	1.0
1446		75		25	1.0
1549	33		66		1.0
1564	23			76	1.0
1693			11	88	0.923564
1720	85			14	0.993533
1721		14	85		0.993533
1799	14		85		0.993533
1938		68		31	1.0
2038		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain