SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene137

Length: 1762 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene137 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	photosystem II stability/assembly factor HCF136 [Arabidopsis thaliana] sp\|O82660.1\|P2SAF_ARATH RecName: Full=Photosystem II stability/assembly factor HCF136, chloroplastic; Flags: Precursor emb\|CAA75723.1\| HCF136 protein [Arabidopsis thaliana] dbj\|BAB0982	-	-	77%
FL-Next	sp=Photosystem II stability/assembly factor HCF136, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	82%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein complex assembly	GO:0006461	Biological Process	86%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	plastid organization	GO:0009657	Biological Process	86%
Blast2go	chloroplast stromal thylakoid	GO:0009533	Cellular Component	86%
Blast2go	chloroplast photosystem II	GO:0030095	Cellular Component	86%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem II HCF136, stability/assembly factor	IPR016705	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O82660

Fln msg:

Fln protein: MPSFMGLRPFSTQFRRREATVNCMTSSSSSSSNKNSKMWGGCTGARASMDGEDFEEDMGRRQWLVATSAASFAAFNLGQEIARAEDVGLSEWERVPLPIDPGVVLLDIAFVPGEPTHGFLLGTRQTLLETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPSGDYVAVSSRGNFYLTWEPGQPYWQPHNRTSARRIQNMGWRADGGLWLLVRGGGLYLSRGSGITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG*

Protein Length: 412

Fln nts: ATGGGGATCAAATTGAGGTATAAAATGAAACGGCGGACAAGGAGGCATGGGAAGGAGGCCTAGTGTTGGGTGGCCTGTGCACGTAGAGGAAGAATGGCCAAAATAATGCACGCAGCTGCGGCAACAGCCACTCTTCCAAAATGCCACCAGTAATAATAAGAACTATTATGCGGTTCAG_-_ATGCCATCATTCATGGGTTTGAGGCCTTTCTCTACCCAATTCAGAAGAAGGGAAGCCACTGTGAATTGCATGACTAGTAGTAGTTCTTCGTCATCAAATAAAAACAGTAAAATGTGGGGTGGATGCACTGGGGCCCGAGCGTCCATGGATGGAGAAGACTTTGAAGAAGACATGGGGAGGAGGCAATGGTTGGTAGCAACATCAGCAGCTTCATTCGCTGCATTCAATCTCGGCCAAGAAATTGCCAGGGCAGAAGACGTTGGTCTCTCTGAGTGGGAGCGAGTTCCTCTTCCAATCGACCCCGGAGTTGTCCTTCTTGATATTGCTTTTGTTCCAGGCGAGCCTACCCATGGTTTTCTCCTTGGTACAAGGCAAACTCTTTTGGAAACAAAGGATGGGGGGGCCTCCTGGGTTCCCCGCTCAATCCCTGCAGCAGAAGATGAGGATTTCAATTACAGATTCAATTCCATAAGTTTTAAGGGAAAGGAGGGTTGGATAGTTGGAAAGCCAGCTATTTTACTGCACACTTCTGATGCTGGAGAAAACTGGGAGCGTATACCTCTAAGTTCTCAACTTCCTGGGGATCTGGTCTATATCCAAGCAACTGGTGAAAAGAGTGCAGAGATGGTCACAGATGAAGGCGCTATTTATGTGACTTCAAATAAAGGATACAATTGGAAGGCTGCTGTGCAAGAAACTGTTTCTGCTACCTTAAACCGCACAGTTTCTAGTGGTATTAGTGGTGCAAGTTACTACACGGGGACTTTTAATACAGTTAACCGTTCTCCCAGTGGTGATTATGTGGCTGTTTCAAGCCGTGGGAATTTCTATCTAACATGGGAGCCTGGCCAGCCATATTGGCAGCCTCACAACAGAACAAGTGCTCGCAGGATTCAGAACATGGGTTGGCGTGCAGATGGTGGACTGTGGCTTCTTGTACGTGGCGGTGGTCTCTACCTTAGCAGAGGCTCAGGGATCACTGAGGAGTTTGATGAAGTACCAATTTCAAGTAGGGGTTTTGGCATTCTTGATGTTGGGTATCGTTCAAAGGATGAAGCTTGGGCAGCTGGAGGCAGTGGCATTTTGCTGAGGACAGTAAATGGTGGAAAAACATGGATCCGTGACAAGGCTGCAGATAATATTGCAGCTAATCTTTATGCTGTGAAGTTTATTGATGAAAAGAAGGGCTTCGTGTTGGGAAATGATGGGATTCTTCTTCGGTATTTGGGATGA___TTAACTATATATTCATCTTAGATTATAATTCTTTGGAGGAAGAAGATTTTTTAGCTTTGTCGGCATGTATAAGTCACTGTAATCAATGGCATGCAATGGAGGACTCAGTTTTGTAGTACCGATGACTTTCCTTTTATGAAAAATATATTGCATGGAAGCATTCCTAAATGAAATTATTTAGATTTTCTCAATAATTTTAGCCATAAAAATTGGCCATTCTTTGGTAAGCAATCATGAGGTCATGCTTCAGGAAAAGAATATTTCACAAGTACATATCAGTAGATACGTTCCAATGTTCCATACGTAATGATGTAGTTTCATAAACAGTGAATTGTGTAACATAGACATATC

Fln Alignment:

Contig137___RRQWLVATSAASFAAFNLGQEIARAEDVGLSEWERVPLPIDPGVVLLDIAFVPGEPTHGFLLGTRQTLLETKDGGASWVPRSIPAAEDEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGENWERIPLSSQLPGDLVYIQATGEKSAEMVTDEGAIYVTSNKGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPSGDYVAVSSRGNFYLTWEPGQPYWQPHNRTSARRIQNMGWRADXXXXXXXXXXXXXXXXXXGITEEFDEVPISSRGFGILDVGYRSKDEAWAAGGSGILLRTVNGGKTWIRDKAADNIAANLYAVKFIDEKKGFVLGNDGILLRYLG
O82660_____________RRELLYQSAAVSLSLSSIVGP-ARADEQ-LSEWERVFLPIDPGVVLLDIAFVPDEPSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILLYTADAGENWDRIPLSSQLPGDMVFIKATEDKSAEMVTDEGAIYVTSNRGYNWKAAIQETVSATLNRTVSSGISGASYYTGTFSAVNRSPDGRYVAVSSRGNFFLTWEPGQPYWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGITEEFEEVPVQSRGFGILDVGYRSEEEAWAAGGSGILLRTRNGGKSWNRDKAADNIAANLYAVKFVDDKKGFVLGNDGVLLRYVG

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1139	25		75		0.996473
1204	83		16		0.994512
1347			11	88	0.923564
1348	11	88			0.923564
1349			11	88	0.923564
1352	11		88		0.923564
1354	11	88			0.923564
1356	88	11			0.923564
1357		11	88		0.923564
1359	11			88	0.923564
1360			11	88	0.923564
1362	88	11			0.923564
1363	88		11		0.923564
1364		11		88	0.923564
1371	12		87		0.992554
1373	87		12		0.992554
1375		12	87		0.992554
1377	87	12			0.992554
1379	12	87			0.992554
1380		12		87	0.992554
1463	87		12		0.992554
1644		41		58	1.0
1687		62	37		1.0
1697	75	12	12		0.975346
1699		87		12	0.992554
1704	28		71		1.0
1706	16	83			0.994512
1709	33	66			1.0
1711	20			80	0.995493
1712		20	20	60	0.99255
1713		50		25	0.995533
1714		75	25		0.996473
1715	25	75			0.996473
1716	50		25	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain