SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene90

Length: 1668 nt

Origin of reads: Inia v1 Biogeco1 v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene90

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pectinesterase (Fragment) n=2 Tax=Vitis vinifera RepID=D7SP30_VITVI	-	-	51%
FL-Next	sp=Pectinesterase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	protein	-	-	66%

Source	GOs	Term	Type	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	66%
Blast2go	membrane	GO:0016020	Cellular Component	66%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	66%
Blast2go	cell wall	GO:0005618	Cellular Component	66%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Ribosomal protein S17	IPR000266	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Pectin lyase fold	IPR012334	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Pectinesterase, active site	IPR018040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2L6

Fln msg: your sequence is longer than subject: 443 - 357

Fln protein: MLSSNNFLLIESHRYWQQVTMRMVAISTCICICIWVLVFSTLFLVAAAVQQNTGDSNIPTSNSPPQPENDYTCTNNDCSTSQLEIVAAKGRYDQWLQTIRNASTPWYLVDAQRREQGINGTRLPQPMLVLSVAQDGSLADFQRVQDAVNFVPENNTQRVIIFIRAGIYREKVTIPRNKPFVTFQGEGKRSTIIRWHDKAYDVDKSGKKMGTLLSASVAVNSDDFSAANMSFENNARFPENALYRQAVALRVSGDRAVFLSCGFYGHQDTLYDHDGRHFFHNCTIRGSVDFVFGNGRSLYEKCHLHALGRVGALTAQNRDEANEPTGFAFVGCRITGEGRPYLGRAWGNFSRVVYVRSVLESDLDPEAWSDFGHPLRKSTAFYGMYECTGNGAVTAIQSGWTKELTYEEARPFLDRSFIDASYWLRPYTAVYIQSISLSHAMP*

Protein Length: 444

Fln nts: GATTGGAGCTAAAACAGATTTCTCAGATATAAGCCCAACAGTTTGGAGCTGAATTCTGCAAACTAAGTAAAAGCAGGCAACTCCCTCC_-_ATGCTTTCATCAAATAATTTCTTGCTCATCGAATCTCATCGGTATTGGCAGCAGGTCACAATGAGAATGGTAGCAATCTCAACCTGTATCTGCATCTGCATCTGGGTTCTTGTCTTTTCAACTCTGTTTCTAGTCGCAGCAGCAGTTCAACAAAATACAGGCGATTCCAACATTCCTACCTCCAATTCTCCTCCCCAGCCTGAAAACGACTATACGTGCACTAACAACGACTGCAGCACCAGCCAACTAGAGATTGTTGCAGCAAAAGGGCGCTACGATCAGTGGCTCCAGACAATTCGAAACGCGAGCACCCCTTGGTACTTGGTGGATGCGCAGCGACGAGAACAGGGCATTAACGGGACTAGGCTGCCACAACCAATGCTAGTCTTGAGCGTTGCCCAAGATGGAAGCCTCGCAGATTTTCAACGCGTGCAAGATGCAGTCAATTTCGTGCCGGAGAACAATACCCAGAGAGTTATTATTTTCATTCGCGCTGGTATTTACAGGGAGAAAGTTACGATCCCAAGGAACAAGCCGTTTGTCACATTCCAGGGTGAAGGCAAGCGGTCCACCATTATCAGATGGCACGACAAGGCCTATGATGTGGATAAATCTGGCAAAAAAATGGGTACCCTTCTCAGTGCATCGGTTGCTGTAAATTCTGACGATTTTTCTGCAGCCAATATGTCTTTTGAGAACAATGCAAGATTCCCAGAAAATGCTCTGTACAGACAGGCCGTTGCACTCAGGGTATCTGGAGACAGGGCCGTGTTTCTGAGTTGTGGGTTTTATGGTCATCAAGATACTCTTTACGACCATGATGGAAGACACTTTTTTCACAACTGCACAATACGGGGTTCAGTAGATTTTGTTTTTGGAAATGGGAGGTCCCTTTATGAGAAATGCCATTTGCACGCCCTGGGCAGAGTAGGCGCCCTTACTGCCCAAAACCGTGACGAAGCCAACGAGCCAACTGGGTTTGCATTCGTGGGATGCAGGATTACGGGCGAAGGTCGTCCATACCTTGGGCGCGCATGGGGTAATTTCTCTCGTGTCGTTTATGTGCGCTCTGTGTTGGAGTCGGATCTTGATCCTGAAGCCTGGTCAGATTTTGGCCATCCCTTGCGTAAAAGTACTGCATTCTATGGTATGTACGAATGCACAGGCAACGGTGCAGTCACGGCCATACAGTCTGGATGGACGAAGGAGTTAACATACGAAGAGGCCCGGCCTTTTCTGGATCGGAGCTTCATCGATGCTTCATATTGGCTTCGGCCTTATACTGCTGTATATATACAGTCGATATCGCTCTCTCATGCTATGCCTTAG___CGTTAATTTGCAGACACTCAATATCGCGTTGTTCTCGAATTTGACAGCTGACCCCTGACTGTATAGATACTGTTGATGGCTGACCCTGAGTGAATAGATACTGTTATTTTTTGGCTTTTGTTTTTTGTATGTACATTTCAGATTGAATGCTGTGCAATATATGCATATCTGGAAAATATGTCTGAACCACAGATCCTTAGTTATGGGAAATACACAGATGTATATTTGTACGGGCATATTTAATACAAACC

Fln Alignment:

Contig90___VAQDGSLADFQRVQDAVNFVPENNTQRVIIFIRAGIYREKVTIPRNKPFVTFQGEGKRSTIIRWHDKAYDVDKSGKKMGTLLSASVAVNSDDFSAANMSFENNARFPENALYR-QAVALRVSGDRAVFLSCGFYGHQDTLYDHDGRHFFHNCTIRGSVDFVFGNGRSLYEKCHLHALGR-VGALTAQNRDEANEPTGFAFVGCRITGEGRPYLGRAWGNFSRVVYVRSVLESDLDPEAWSDFGHPLRKS-TAFYGMYECTGNGAVTAIQSGWTKELTYEEARPFLDRSFIDASYWLR
A9P2L6____________VVDQSGHGDFLTVQAAVDSVIEGNREIVIINIHAGYYLEKVLVPATKPYITFQGAGKEFTVIEWHNRASDLDPTGQQLRTYHSASVTVLANYFSAKNISFKNTAPAPMPGMEGWQAVAFRISGDKAYFLGCGFYGAQDTLCDDEGRHYFKECYIEGSIDFIFGNGRSMYKHCELHSIAKEFGSIAAQGREKPYEKTGFAFVHCTVTGTGPLYIGRAMGQYSRIVYAYTYFDDIVAREGWDDWGHQTTKDRTAFFGVYKCYGPGAAAAGGVSWVHELTPEEARPFLVKSYVNGKHWIQ

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1146		81		18	0.999994
1266	90		10		0.999898
1314			92	7	0.999664
1468			65	35	1.0
1476	15		85		1.0
1497	11		88		0.999952
1509		58	41		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain