SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene42

Length: 2328 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene42
CGTCGTGACCTTGGCTGTCACTCAAGTTTACATTGCATTTGCAATTTTGGCCTTGAGGTGAAATGGATCGCAGGAATCAATACGAGGGCGCGCTGATAATTTTACTGGTTGTGGCGGTGAATCTGATGACAGGAGCGGCGGAGAGGTTGTTAAGTGTGGGCGCTTCTCCAAAGACATTGAACCGCTCAGGAGACACTGCGAGGCTCACCCTTACTTGGACTGCAAATTCATCTGCCTCCTCTTCTGACATGGACTGGCTGGGGATTTACAATCCTCCAGATTCCGCAGATGATCATTTCATAGGTTATGTCCTGCTGTCTTCCTTCTGCCCAAACTGGGTGAAGGAGGAGGGTTCATGTTATCTGGATCTTCCTCTCATCAATCTGCGAAGGCCTTATGAGTTCCGTGTGTTTCGATGGGACAAGTCTGACATATCCAACACGACTCCAATGGACGAGGATCACAATCCCCTGCCCTCCACCGCCCATCTTCTGGCGAGGAGCGACCCCCTTAGTTTTCGCAATTTCAACGATCCAGCTCAGCTCCACCTGGCCTTCACCTCCAATCAGGATGAGATGCGTGTCATGTTCCTGACAAGCGATGACATAAAGAGCTATGCCAGATATGGGTTAGATGAGGGGAAGCTGAATAGCGTGGCAAGGGCTCAGTCCGTCACCTATACGCGCCCGGACATGTGCGATGAACCTGCTAACACAAGTTTTGGATGGAGGGATCCCGGGTATATTCATGATGCTGTAATGCAGGGACTGGAGCCAGGGAAGCGCTATTTTTATGAGGTCGGAAGCGATGAGGGTGGCTGGAGTTCGATTCAGAGTTTTGTATCTTTAGATAAAGATTCAGACGAAACTTTTGCATTCCTCTTTGGTGATTTGGGAGTGTCTGTACCCTACAAAACTTTTCTCTGGACCCAGGAAGAGAGCAAGCGTACAGTCAAATGGCTAAGGCGCGACCTTGAAGAGCTTGGGGATAAACCTACATTTATTTCTCATATTGGTGACATCAGCTATGCCAGAGGCTATGCATGGCTATGGGATGCATTCTTTACTCAGATTGAGCCTCTTGCATCCAAGGTTCCTTATCATGTATGCATGGGAAATCATGAGTATGACTGGCCATTACAGCCGTGGAAACCTGAATGGTCAACCAGATTGTATGGAACTGACGGAGGTGGTGAATGTGGGGTCCCTTACAGCTTAAAGTTTCAGATGCCCGGTGATTCTTCTTTTCCAACTGGAAATGCTGCCCCATCAACAAAAAATCTCTACTATTCATTTGACCTGGGAGTTGTACATTTCTTGTATATGTCCACTGAAACTAATTTTTTACGAGGAAGTGATCAATATGCTTTCATAGAGCACGACCTGAAAAAGGTTGATAGAAACAAGACGCCATTTGTAGTATTTCAAGGTCACCGTCCAATGTATACCACTGACAATGCAGTAAGTGAACGGCCCCTACGAGAAAAAATGATTGAACACTTGGAGCCTCTGCTAGTTAAGTATAGAGTCAACCTGGTCTTATGGGGCCATGTTCACAAGTATGAGAAGTTTTGTCCAATGAAAAACTTTTCATGTGGAAGCATGGACAGTGAAGCTGATCTTCCCATACATGTTGTAATTGGAATGGGTGGACAAGACTGGCAACCAATATGGGAACCTAGGCCTGATCACCCAACAGATCCTATCTTTCCACAACCTGTTAGATCTCTTTACCGAAGCAGCGAACTTGGTTATACAAGACTATATGCAACTAGGAAAACATTGACACTTTCCTACATTGGGAACCATGACGGACAGGTCCATGATGTTTTAGAAATACGTTTGAAAGGTATTTAGAAATCTTCTAACTGGATTTAGTTTATGAAGGCGGGCAGCTTATTCCTGGTTGGAGCTTTACTCGGTTTTATTGGTGGATACCAATTCTACTCCAAAAGAGACGTGTTCAACGGACAGGGCTGGAGAGCGTTGAGCATTTATAGACAGCATAGAAGACGAAGATGCCATGCTAGCATAACAAAAACCTACCAAAACAGAACAGGTTTTCGGGATGGGTACCTATTTATAATCTAGAAAAGAAACATGATCAGTGGACAGGGCTTAATGCTTATGAATCCTAATGCATATCATGCCATGAGAGCATGGAAGATAAAGTAAACTATATTACTATCCAAAAGCCATCAGAACCAATTAATAGACTGCAAATACTATGGTTATAACTTATAATGTAGCAGAGAAAAGCAAGTCAGTTGGCCACGCTGAAGTATTTTTATCAAATAATTCCTCTAATAGCTATAAAATTCTCTTAGCC

Ace file of the UniGene sp_v2.0_unigene42 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide pyrophosphatase/phosphodiesterase, putative n=1 Tax=Ricinus communis RepID=B9RCW2_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	purple acid phosphatase	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	71%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	71%
Blast2go	Riboflavin metabolism	00740		0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	71%
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	chloroplast	GO:0009507	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Flavin monooxygenase FMO	IPR000960	-	-
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACP9

Fln msg: your sequence is longer than subject: 598 - 314

Fln protein: MDRRNQYEGALIILLVVAVNLMTGAAERLLSVGASPKTLNRSGDTARLTLTWTANSSASSSDMDWLGIYNPPDSADDHFIGYVLLSSFCPNWVKEEGSCYLDLPLINLRRPYEFRVFRWDKSDISNTTPMDEDHNPLPSTAHLLARSDPLSFRNFNDPAQLHLAFTSNQDEMRVMFLTSDDIKSYARYGLDEGKLNSVARAQSVTYTRPDMCDEPANTSFGWRDPGYIHDAVMQGLEPGKRYFYEVGSDEGGWSSIQSFVSLDKDSDETFAFLFGDLGVSVPYKTFLWTQEESKRTVKWLRRDLEELGDKPTFISHIGDISYARGYAWLWDAFFTQIEPLASKVPYHVCMGNHEYDWPLQPWKPEWSTRLYGTDGGGECGVPYSLKFQMPGDSSFPTGNAAPSTKNLYYSFDLGVVHFLYMSTETNFLRGSDQYAFIEHDLKKVDRNKTPFVVFQGHRPMYTTDNAVSERPLREKMIEHLEPLLVKYRVNLVLWGHVHKYEKFCPMKNFSCGSMDSEADLPIHVVIGMGGQDWQPIWEPRPDHPTDPIFPQPVRSLYRSSELGYTRLYATRKTLTLSYIGNHDGQVHDVLEIRLKGI*

Protein Length: 599

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTACATTGCATTTGCAATTTTGGCCTTGAGGTGAA_-_ATGGATCGCAGGAATCAATACGAGGGCGCGCTGATAATTTTACTGGTTGTGGCGGTGAATCTGATGACAGGAGCGGCGGAGAGGTTGTTAAGTGTGGGCGCTTCTCCAAAGACATTGAACCGCTCAGGAGACACTGCGAGGCTCACCCTTACTTGGACTGCAAATTCATCTGCCTCCTCTTCTGACATGGACTGGCTGGGGATTTACAATCCTCCAGATTCCGCAGATGATCATTTCATAGGTTATGTCCTGCTGTCTTCCTTCTGCCCAAACTGGGTGAAGGAGGAGGGTTCATGTTATCTGGATCTTCCTCTCATCAATCTGCGAAGGCCTTATGAGTTCCGTGTGTTTCGATGGGACAAGTCTGACATATCCAACACGACTCCAATGGACGAGGATCACAATCCCCTGCCCTCCACCGCCCATCTTCTGGCGAGGAGCGACCCCCTTAGTTTTCGCAATTTCAACGATCCAGCTCAGCTCCACCTGGCCTTCACCTCCAATCAGGATGAGATGCGTGTCATGTTCCTGACAAGCGATGACATAAAGAGCTATGCCAGATATGGGTTAGATGAGGGGAAGCTGAATAGCGTGGCAAGGGCTCAGTCCGTCACCTATACGCGCCCGGACATGTGCGATGAACCTGCTAACACAAGTTTTGGATGGAGGGATCCCGGGTATATTCATGATGCTGTAATGCAGGGACTGGAGCCAGGGAAGCGCTATTTTTATGAGGTCGGAAGCGATGAGGGTGGCTGGAGTTCGATTCAGAGTTTTGTATCTTTAGATAAAGATTCAGACGAAACTTTTGCATTCCTCTTTGGTGATTTGGGAGTGTCTGTACCCTACAAAACTTTTCTCTGGACCCAGGAAGAGAGCAAGCGTACAGTCAAATGGCTAAGGCGCGACCTTGAAGAGCTTGGGGATAAACCTACATTTATTTCTCATATTGGTGACATCAGCTATGCCAGAGGCTATGCATGGCTATGGGATGCATTCTTTACTCAGATTGAGCCTCTTGCATCCAAGGTTCCTTATCATGTATGCATGGGAAATCATGAGTATGACTGGCCATTACAGCCGTGGAAACCTGAATGGTCAACCAGATTGTATGGAACTGACGGAGGTGGTGAATGTGGGGTCCCTTACAGCTTAAAGTTTCAGATGCCCGGTGATTCTTCTTTTCCAACTGGAAATGCTGCCCCATCAACAAAAAATCTCTACTATTCATTTGACCTGGGAGTTGTACATTTCTTGTATATGTCCACTGAAACTAATTTTTTACGAGGAAGTGATCAATATGCTTTCATAGAGCACGACCTGAAAAAGGTTGATAGAAACAAGACGCCATTTGTAGTATTTCAAGGTCACCGTCCAATGTATACCACTGACAATGCAGTAAGTGAACGGCCCCTACGAGAAAAAATGATTGAACACTTGGAGCCTCTGCTAGTTAAGTATAGAGTCAACCTGGTCTTATGGGGCCATGTTCACAAGTATGAGAAGTTTTGTCCAATGAAAAACTTTTCATGTGGAAGCATGGACAGTGAAGCTGATCTTCCCATACATGTTGTAATTGGAATGGGTGGACAAGACTGGCAACCAATATGGGAACCTAGGCCTGATCACCCAACAGATCCTATCTTTCCACAACCTGTTAGATCTCTTTACCGAAGCAGCGAACTTGGTTATACAAGACTATATGCAACTAGGAAAACATTGACACTTTCCTACATTGGGAACCATGACGGACAGGTCCATGATGTTTTAGAAATACGTTTGAAAGGTATTTAG___AAATCTTCTAACTGGATTTAGTTTATGAAGGCGGGCAGCTTATTCCTGGTTGGAGCTTTACTCGGTTTTATTGGTGGATACCAATTCTACTCCAAAAGAGACGTGTTCAACGGACAGGGCTGGAGAGCGTTGAGCATTTATAGACAGCATAGAAGACGAAGATGCCATGCTAGCATAACAAAAACCTACCAAAACAGAACAGGTTTTCGGGATGGGTACCTATTTATAATCTAGAAAAGAAACATGATCAGTGGACAGGGCTTAATGCTTATGAATCCTAATGCATATCATGCCATGAGAGCATGGAAGATAAAGTAAACTATATTACTATCCAAAAGCCATCAGAACCAATTAATAGACTGCAAATACTATGGTTATAACTTATAATGTAGCAGAGAAAAGCAAGTCAGTTGGCCACGCTGAAGTATTTTTATCAAATAATTCCTCTAATAGCTATAAAATTCTCTTAGCC

Fln Alignment:

Contig42___MDRRNQYEGXXXXXXXXXVNLMTGAAERLLSVGASPKTLNRSGDTARLTLTWTANSSASSSDMDWLGIYNPPDSADDHFIGYVLLSSFCPNWVKEEGSCYLDLPLINLRRPYEFRVFRWDKSDISNTTPMDEDHNPLPSTAHLLARSDPLSFRNFNDPAQLHLAFTSNQDEMRVMFLTSDDIKSYARYGLDEGKLNSVARAQSVTYTRPDMCDEPANTSFGWRDPGYIHDAVMQGLEPGKRYFYE
D5ACP9____________MGRRTKFEEELIIAFVVVVSLMIGAANGLLTVESSPKTLNRSGDNVTLTLTWTANSSSSSSDMDWLGIYNPPDSADEHFIGYILLSSFCPNWM--EGSCYVDLPLINLRRPYEFRVFRWDKSEISNRTPVDEAHNPLPSTTHLLARSDGVSFRNLNDPAQLHLAFTSNQDEMRVMFLTKDAIKSSVRYGLDENEMDRVAEARSVTYTRSEMCDAPANTSLGWMDPGYIHDAVMQGLEPGKRYFYQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1990		71		28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain