SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene33

Length: 1168 nt

Origin of reads: Inia v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene33

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	B3 domain-containing transcription factor FUS3 n=2 Tax=Arabidopsis RepID=FUS3_ARATH	-	-	2.0e-35	38%
FL-Next	tr=Transcription factor viviparous 1; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	56%
Blast2go	b3 domain-containing transcription factor fus3	-	-	5.34623e-41	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of isoprenoid metabolic process	GO:0019747	Biological Process	5.34623e-41	57%
Blast2go	regulation of cellular ketone metabolic process	GO:0010565	Biological Process	5.34623e-41	57%
Blast2go	monocarboxylic acid metabolic process	GO:0032787	Biological Process	5.34623e-41	57%
Blast2go	carboxylic acid biosynthetic process	GO:0046394	Biological Process	5.34623e-41	57%
Blast2go	regulation of lipid biosynthetic process	GO:0046890	Biological Process	5.34623e-41	57%
Blast2go	terpenoid biosynthetic process	GO:0016114	Biological Process	5.34623e-41	57%
Blast2go	regulation of cellular biosynthetic process	GO:0031326	Biological Process	5.34623e-41	57%
Blast2go	regulation of secondary metabolic process	GO:0043455	Biological Process	5.34623e-41	57%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	5.34623e-41	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	B3 DNA binding domain	IPR003340	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FVK1

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 40 aas, putative chimeric sequence, your sequence is shorter than subject: 240 - 828

Fln protein: VHSQRPQRRGNHGHMNAQQEIRHEINTEDLEFLLQKMLHNSDVGPLGRVVIPKRDAEAHLPALVAREGIMISMVDMDTLLSWNFKFRFWPNNKSRMYILENTGQFVRSHGLVRGDYMMVYRDNTSGQYVIKGKKASEDEEASGNSGGKNEVCSAPLAINGGSSEQEAHHSNQNEVSSNSPYESSVGANGSPHGHIFSTVDDIFSVDLAIDFTGIPNSPQLESIPSFGSDDMDGLDDFFP*

Protein Length: 241

Fln nts: GTCCACTCTCAAAGGCCACAACGTCGAGGCAATCACGGTCACATGAATGCGCAACAAGAAATTAGACATGAAATAAACACAGAGGATCTCGAGTTTCTTCTTCAAAAGATGCTCCACAACAGTGATGTGGGCCCTCTTGGGAGGGTGGTGATTCCCAAGAGGGACGCTGAAGCCCATCTTCCAGCCCTGGTTGCTCGAGAAGGAATCATGATATCAATGGTGGACATGGATACCTTACTATCATGGAACTTCAAATTCAGGTTTTGGCCCAACAACAAAAGCAGAATGTACATTCTTGAGAATACTGGACAATTTGTTAGATCACACGGCCTTGTACGCGGAGATTACATGATGGTATACAGAGACAATACGAGTGGGCAATATGTGATTAAAGGGAAGAAGGCCTCAGAAGATGAAGAGGCTTCTGGAAATTCCGGTGGCAAAAACGAAGTGTGCTCGGCCCCGCTTGCAATCAACGGTGGCAGCAGCGAACAAGAAGCACATCACAGCAATCAGAACGAGGTAAGCAGCAATTCGCCCTATGAGAGCTCAGTTGGGGCCAATGGCTCACCTCATGGCCATATCTTTTCGACTGTGGACGACATATTTAGTGTAGATTTGGCAATAGATTTCACCGGAATCCCAAATTCTCCGCAGCTGGAATCGATTCCGAGCTTCGGCTCGGATGACATGGACGGCCTGGACGACTTTTTTCCTTAA___CGAAACGTCTCAATCAATCGGCATCGATATTGACAGTGCACCTCTATGTCTGCTGCCTGTTAATATGGAGATATTGAAGATGCCTGGTAAATTTATTTTTTCATCAGAGTCTCCATTGTAATTGAAACTCCGGCCCGGACTGCGATCACGGCGATAACGTCAATGTCGTACCCTGGCCGGAAAATTTACAGAAGCCGATTGTAACAACCATACAACTCCGTCTAACATTATTTATTTTCCCGTCACTAAATTTGAACGGTTACTATTGTTGATTATTGATGATCAGCGCTCTTGGTTTATCCAAAAGCGTTGAGAAACATTTATTTTTGGATATTTTATGTACTGCTAAATGAATCTGAAACAGATTTATTTTTGGATATTTTATGTTTTGTTTGAATGTGTTCGTGGGACATTTATTCCACTAATATACGTCCGTTTCAATTATTAT

Fln Alignment:

Contig33___LEFLLQKMLHNSDVGPLGRVVIPKRDAEAHLPALVAREGIMISMVDMDTLLSWNFKFRFWPNNKSRMYILENTGQFVRSHGLVRGDYMMVYRDNTSGQYVIKGKKASEDEEASGNS
Q9FVK1____________LKFLLQKVLKQSDVGNLGRIVLPKKEAEIHLPELEARDGISIAMEDIVTSRVWNLRYRFWPNNKSRMYLLENTGDFVRSNGLQEGDFIVIYSDTKTGKYMIRGVKVPRSDTTSASA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
184	10		90		0.90298
283	88			11	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain