SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92476

Length: 222 nt

UniGene Fasta

>sp_v2.0_unigene92476
ATGGATTAATATTAAGAACCTGAGGGTTTTGAAAGTGGAGGGGAGTGTGTTGGAAACACTGTGGCAAGGCAGATCACAGGCACCTTCGCAGTTGCAGGAATTAAAGATTATCGATGCGAGCCGTCTCACGAGCATTCCAAAGTCCATAGGGCAGCTGAAGTACCTCCACCACATGGACCTGTCGGGGTGCGAGAAATTGGAGAGGCTGCCAGATTCTTTCGG

Ace file of the UniGene sp_v2.0_unigene92476

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I9_PINTA	-	-	2.0e-08	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Blast2go	tir nbs lrr disease resistance protein	-	-	4.13926e-11	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABF9

Fln msg: Distance to subject end: 179 aas, your sequence is shorter than subject: 73 - 392

Fln protein: WINIKNLRVLKVEGSVLETLWQGRSQAPSQLQELKIIDASRLTSIPKSIGQLKYLHHMDLSGCEKLERLPDSF

Protein Length: 74

Fln nts: ATGGATTAATATTAAGAACCTGAGGGTTTTGAAAGTGGAGGGGAGTGTGTTGGAAACACTGTGGCAAGGCAGATCACAGGCACCTTCGCAGTTGCAGGAATTAAAGATTATCGATGCGAGCCGTCTCACGAGCATTCCAAAGTCCATAGGGCAGCTGAAGTACCTCCACCACATGGACCTGTCGGGGTGCGAGAAATTGGAGAGGCTGCCAGATTCTTTCGG

Fln Alignment:

uma_euler_46540___WINIKNLRVLKVEGSVLETLWQGRSQAPSQLQELKIIDASRLTSIPKSIGQLKYLHHMDLSGCEKLERLPDS
D5ABF9_______________WISMMKLRVLEMEGWNSKKWWQKESQPPLQLRELRIYSSETLRSLPDFFGKLANLQHLSLSHLGSLEMLPDS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain