SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92324

Length: 225 nt

UniGene Fasta

>sp_v2.0_unigene92324
GGATGGAATGATCCGGACATGTTGGAAGTAGGAAATGGTAACGTAACTAGAGAGGAATACAGGGCACATTTCAGCTTGGCACATTTCAGCTTATGGGCCCTAATGAAGGCACCATTGTTGATAGGGTGAGGTCTATGAGCCCAGGGACCGTGGAGATTCTGAGCAATGCAGAGGTGATTGCTGTTAATCAAGATCCATTGGGAATACAAGGTAAAAAGGTCTACA

Ace file of the UniGene sp_v2.0_unigene92324

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha-galactosidase [Arabidopsis thaliana] gb\|AAL67017.1\| putative alpha-galactosidase [Arabidopsis thaliana] gb\|AAM45068.1\| putative alpha-galactosidase [Arabidopsis thaliana] gb\|AEE79508.1\| alpha-galactosidase [Arabidopsis thaliana]	-	-	2.0e-19	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	alpha-galactosidase alpha-n-	-	-	6.2974e-20	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity	GO:0016787	Molecular Function	6.2974e-20	81%
Blast2go	vacuole	GO:0005773	Cellular Component	6.2974e-20	81%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, clan GH-D	IPR000111	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Glycoside hydrolase, family 27	IPR002241	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWB1

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 84 aas, your sequence is shorter than subject: 75 - 396

Fln protein: GWNDPDMLEVGNGNVTREEYRAHFSLAHFSLWALMKAPLLIxxRSMSPGTVEILSNAEVIAVNQDPLGIQGKKVY

Protein Length: 76

Fln nts: GGATGGAATGATCCGGACATGTTGGAAGTAGGAAATGGTAACGTAACTAGAGAGGAATACAGGGCACATTTCAGCTTGGCACATTTCAGCTTATGGGCCCTAATGAAGGCACCATTGTTGATAxxxxxxAGGTCTATGAGCCCAGGGACCGTGGAGATTCTGAGCAATGCAGAGGTGATTGCTGTTAATCAAGATCCATTGGGAATACAAGGTAAAAAGGTCTACA

Fln Alignment:

uma_euler_33944___GWNDPDMLEVGNGNVTREEYRAHFSLAHFSLWALMKAPLLIGxxVRSMSPGTVEILSNAEVIAVNQDPLGIQGKKV
A9NWB1_______________GWNDPDMLEVGNGNMNIEEYR-----SHFSIWALMKAPLLIGxxIRSASPQTLEILGNKEVINVNQDPLGVQGKKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain