SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92275

Length: 518 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene92275
AACACACTTGCTGAAGTGGGGCCATCTATAACACTCTCGACCCTCTCAGAGGTTCTGGCATTTGCAGTTGGAAGCTTCATCTCTATGCCTGCGTGTAGAGTGTTCTCGATGTTTGCAGCTCTTGCCGTGTTATTGGACTTCTTACTTCAAGTGACTGCATTTGTTTCCCTTATGACATTTGATTTCAGAAGAACAGAGGAAAACAGAGTTGATTGCTTTCCCTGCATAAGAGTTAGTTCATTGGCAACTGAACTTGAACATGGTAATTTGGGCAAGAGGCAGCAAAAACCTGGTCTTTTGGTACGTTACATGAAGGATATCCATGCACCTGTCCTGAGCATGCCAGCAGTGAAAGTTGCAGTCCTTTTGGTGTTCAGTGCTTTTGCCTTTGCAAGCATTGCACTAACTACAAGACTTCAACCAGGCCTGGAGCAACAGGTGGTGCTTCCACGAGATTCTTATCTCCAGGGTTATTTCAATAACATATCCGAGTATCTTCGAGTTGGACCCCCGCTTTA

Ace file of the UniGene sp_v2.0_unigene92275 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Hedgehog receptor, putative n=1 Tax=Ricinus communis RepID=B9R8N7_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	70%
Blast2go	niemann-pick c1	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	82%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Patched	IPR003392	-	-
Sma3	Niemann-Pick C type protein	IPR004765	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SMD3

Fln msg: Distance to subject end: 392 aas, your sequence is shorter than subject: 172 - 584

Fln protein: NTLAEVGPSITLSTLSEVLAFAVGSFISMPACRVFSMFAALAVLLDFLLQVTAFVSLMTFDFRRTEENRVDCFPCIRVSSLATELEHGNLGKRQQKPGLLVRYMKDIHAPVLSMPAVKVAVLLVFSAFAFASIALTTRLQPGLEQQVVLPRDSYLQGYFNNISEYLRVGPPL

Protein Length: 173

Fln nts: AACACACTTGCTGAAGTGGGGCCATCTATAACACTCTCGACCCTCTCAGAGGTTCTGGCATTTGCAGTTGGAAGCTTCATCTCTATGCCTGCGTGTAGAGTGTTCTCGATGTTTGCAGCTCTTGCCGTGTTATTGGACTTCTTACTTCAAGTGACTGCATTTGTTTCCCTTATGACATTTGATTTCAGAAGAACAGAGGAAAACAGAGTTGATTGCTTTCCCTGCATAAGAGTTAGTTCATTGGCAACTGAACTTGAACATGGTAATTTGGGCAAGAGGCAGCAAAAACCTGGTCTTTTGGTACGTTACATGAAGGATATCCATGCACCTGTCCTGAGCATGCCAGCAGTGAAAGTTGCAGTCCTTTTGGTGTTCAGTGCTTTTGCCTTTGCAAGCATTGCACTAACTACAAGACTTCAACCAGGCCTGGAGCAACAGGTGGTGCTTCCACGAGATTCTTATCTCCAGGGTTATTTCAATAACATATCCGAGTATCTTCGAGTTGGACCCCCGCTTTA

Fln Alignment:

uma_euler_31615___NTLAEVGPSITLSTLSEVLAFAVGSFISMPACRVFSMXXXXXXXXXXXLQVTAFVSLMTFDFRRTEENRVDCFPCIRVSSLATELEHGNLGKRQQKPGLLVRYMKDIHAPVLSMPXXXXXXXXXXXXXXXXXXXLTTRLQPGLEQQVVLPRDSYLQGYFNNISEYLRVGPPL
B9SMD3_______________NALVEVGPSITLASLSEILAFAVGSFIPMPACRVFSMFAALAVLLDFLLQVTAFVALIVFDCKRAEDNRIDCFPCIKLSSSSEEM---NEGVYQRRPGLLARYMKEVHAPILGLWGVKIVVIAVFVAFALASIALCTRIDSGLEQQIVLPRDSYLQGYFNNVSDYLRIGPPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain