SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92262

Length: 530 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene92262
ATTGCAAAATAGTGATTTTACTAGCGATTGTGCAGGGGCAGATTCGAGTTCGAAACTCAGAAGAGGTATCTGTCTGTAATTTTGGGGAAGGGGCGAGGGCTAGCTGAGAAAATGATGTGTGAATCGCAGCCTCGGGAAGTCTGGAGAACGTCCCGGGATTTGATCTCCGTACCTTCTGACAAGGAGGAGCCGACCTCCAGAGCATCAAAGAAAATTAACAAGACTGGCGCCCTGCAGTATTTGCATTCCCAGGATGCAGGGGAAGACGGGAGGGAGCGCATGAGGTGTTCATCGGTGGTTGTCCAGCGAGTCGAGGCGCCGGTGAGCGTTGTCTGGTCGCTGGTTCGACGCTTCGATGAGCCCCAAATTTACAAGCACTTTGTCCGCAAGTGCTCCATACGAGGTGAGGGGGATCTGAAGGTAAAGGTCGGCTGCCTCAGAGAGGTTCTAGTCGTCTCTGGTCTCCCTGCGGCCAACAGCACCGAAAGGCTCGACATTCTGGATGAGGAGCAGCATATTCTGAGCTTCAG

Ace file of the UniGene sp_v2.0_unigene92262 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abscisic acid receptor PYL4 n=2 Tax=Arabidopsis RepID=PYL4_ARATH	-	-	5.0e-23	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	protein	-	-	6.37591e-43	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	6.37591e-43	78%
Blast2go	receptor activity	GO:0004872	Molecular Function	6.37591e-43	78%
Blast2go	protein binding	GO:0005515	Molecular Function	6.37591e-43	78%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Pyrokinin, conserved site	IPR001484	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Streptomyces cyclase/dehydrase	IPR005031	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NQM9

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 139 - 213

Fln protein: MMCESQPREVWRTSRDLISVPSDKEEPTSRASKKINKTGALQYLHSQDAGEDGRERMRCSSVVVQRVEAPVSVVWSLVRRFDEPQIYKHFVRKCSIRGEGDLKVKVGCLREVLVVSGLPAANSTERLDILDEEQHILSF

Protein Length: 140

Fln nts: ATTGCAAAATAGTGATTTTACTAGCGATTGTGCAGGGGCAGATTCGAGTTCGAAACTCAGAAGAGGTATCTGTCTGTAATTTTGGGGAAGGGGCGAGGGCTAGCTGAGAAA_-_ATGATGTGTGAATCGCAGCCTCGGGAAGTCTGGAGAACGTCCCGGGATTTGATCTCCGTACCTTCTGACAAGGAGGAGCCGACCTCCAGAGCATCAAAGAAAATTAACAAGACTGGCGCCCTGCAGTATTTGCATTCCCAGGATGCAGGGGAAGACGGGAGGGAGCGCATGAGGTGTTCATCGGTGGTTGTCCAGCGAGTCGAGGCGCCGGTGAGCGTTGTCTGGTCGCTGGTTCGACGCTTCGATGAGCCCCAAATTTACAAGCACTTTGTCCGCAAGTGCTCCATACGAGGTGAGGGGGATCTGAAGGTAAAGGTCGGCTGCCTCAGAGAGGTTCTAGTCGTCTCTGGTCTCCCTGCGGCCAACAGCACCGAAAGGCTCGACATTCTGGATGAGGAGCAGCATATTCTGAGCTTCAG

Fln Alignment:

uma_euler_31088___SRASKKINKTGALQYLHSQDA---------------GEDGRERMRCSSVVVQRVEAPVSVVWSLVRRFDEPQIYKHFVRKCSIRGEGDLKVKVGCLREVLVVSGLPAANSTERLDILDEEQHILSF
A9NQM9_______________SGASKQITKTGAVQYLKGEEGYGEWLKEVMGRYHYHSHDGARECRCSSVVVQQVEAPVSVVWSLVRRFDQPQVYKHFVSNCFMRGD----LKVGCLREVRVVSGLPAATSTERLDILDEERHILSF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain