SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92202

Length: 551 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene92202
AATCTCTATATCTTTGCAAATAGGGATTCCATCGAATTGAATTACATTACCAGCACCGTTGTGCGCAACTTCCCTACCATACCCGGGGAGCCCAGAAACTATCCTTCGGCGGGAAGTTCGGTGCTTCTGCCACTTGACGGTCCGAGCGGTTACCAGACTGCTGAGGTCATGGTGTGCGGAGGGGCTCAGGCAGGGGCCTTCCGGAACCCCACTGCACAGTTCCCGACTTCTCAGACCTGCGGGAGAATGGTGATCACCGCGGCTGCGCCTGCTTGGGCTATGTCGAACATGCCCATGAGAAGATGCATGGGTGATATGATCATTCTTCCTTCTGGCGAAGTGCTTATAATCAACGGCGCCGGACGGGGTTCTCAGGGCTACGGCTTTGCTTCGGCCCCCGTCTTGAATCCAGTGCTTTACAATCCAGTACAGCTTACTTTTTCTGTCCTGCAGGCCACTACAATTCCTCGCTTGTATCATTCCACAGCTAATTTGCTGCCGGATGGTCGTGTGTTGGTTGCTGGGAGTAATACTCATCTGTTCTATACTTT

Ace file of the UniGene sp_v2.0_unigene92202 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glyoxal oxidase-related protein [Arabidopsis thaliana] emb\|CAB88357.1\| putative protein [Arabidopsis thaliana] gb\|AAL06866.1\| AT3g53950/F5K20_250 [Arabidopsis thaliana] dbj\|BAC41808.1\| unknown protein [Arabidopsis thaliana] gb\|AAO11608.1\| At3g53950/F5K20_	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	65%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Glyoxal oxidase, N-terminal	IPR009880	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RHA4

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 183 - 535

Fln protein: NLYIFANRDSIELNYITSTVVRNFPTIPGEPRNYPSAGSSVLLPLDGPSGYQTAEVMVCGGAQAGAFRNPTAQFPTSQTCGRMVITAAAPAWAMSNMPMRRCMGDMIILPSGEVLIINGAGRGSQGYGFASAPVLNPVLYNPVQLTFSVLQATTIPRLYHSTANLLPDGRVLVAGSNTHLFYT

Protein Length: 184

Fln nts: AATCTCTATATCTTTGCAAATAGGGATTCCATCGAATTGAATTACATTACCAGCACCGTTGTGCGCAACTTCCCTACCATACCCGGGGAGCCCAGAAACTATCCTTCGGCGGGAAGTTCGGTGCTTCTGCCACTTGACGGTCCGAGCGGTTACCAGACTGCTGAGGTCATGGTGTGCGGAGGGGCTCAGGCAGGGGCCTTCCGGAACCCCACTGCACAGTTCCCGACTTCTCAGACCTGCGGGAGAATGGTGATCACCGCGGCTGCGCCTGCTTGGGCTATGTCGAACATGCCCATGAGAAGATGCATGGGTGATATGATCATTCTTCCTTCTGGCGAAGTGCTTATAATCAACGGCGCCGGACGGGGTTCTCAGGGCTACGGCTTTGCTTCGGCCCCCGTCTTGAATCCAGTGCTTTACAATCCAGTACAGCTTACTTTTTCTGTCCTGCAGGCCACTACAATTCCTCGCTTGTATCATTCCACAGCTAATTTGCTGCCGGATGGTCGTGTGTTGGTTGCTGGGAGTAATACTCATCTGTTCTATACTTT

Fln Alignment:

uma_euler_29016___NLYIFANRDSIELNYITSTVVRNFPTIPGEPRNYPSAGSSVLLPLDGPSGYQTAEVMVCGGAQAGAFRNPTAQFPTSQTCGRMVITAAAPAWAMSNMPMRRCMGDMIILPSGEVLIINGAGRGSQGYGFASAPVLNPVLYNPVQLTFSVLQATTIPRLYHSTANLLPDGRVLVAGSNTHLFYT
D8RHA4_______________NLFVFANRDSILLNYFTNTVLRRYPTLPGEPRNYPSAGSSVMLPLDSANSFSNAEILVCGGSNKDAYAYPAGQLPASQTCGRMVATSGDPNWNILNMPTRRNMGDMVLLPTGQVLIINGAQSGSQGWGYASSPCLNPVIFDPVSSKFETQAASTIPRMYHSTANLLPDGRVLVAGSNTHEYYT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain