SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92151

Length: 538 nt

UniGene Fasta

>sp_v2.0_unigene92151
TTCTCCTATCATGCAAGTCAATGTTGTACATACTACGCAAGCCCCCAAAGCATTTTGAAATGTTAGTTAAAGAGCATTTTAGAAAACGCGGTCATTATATTCTCCGTGCCTGTGATGCCTATCTGAAAGGGGCTCCAGTTGGATCGCTTTCAGAAGATTGTACGTTGCCGCCCAATGTTGGAGCAGGGTCTCAGACTCAGAATAGTAGTTCTGTTGGGTTCAAGCTTATGTTGATTAAAACTGTTCCCAAACTTATTTCAGCCTTCATGAAGCTGGAGTAGATTGCCAAGAATTTCAGCAGACAATAGCCAAAGAATCCAAGGGACTCTGAGAATTTTAGATGTGTGGTTATTTCTTTCAAATGATTTACATGGCGTTCAAGAGCTCATGTACAGTTGCAGAAGGTTTTAGATTGTGGATTATATTATACATTTACCACATTCTTGCTTATCTTATGTTTATGTTTAAATGTGATTACATATTATCGTGATTTTGGGAAAAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAC

Ace file of the UniGene sp_v2.0_unigene92151

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana] sp\|Q9ZVX1.1\|UBC23_ARATH RecName: Full=Probable ubiquitin-conjugating enzyme E2 23; AltName: Full=Ubiquitin carrier protein 23 gb\|AAC64223.1\| putative ubiquitin-conjugating enzyme [Arabidop	-	-	5.0e-23	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	probable ubiquitin-conjugating enzyme e2 23-like	-	-	2.52608e-25	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2M6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 21 aas, your sequence is shorter than subject: 87 - 108

Fln protein: MLYILRKPPKHFEMLVKEHFRKRGHYILRACDAYLKGAPVGSLSEDCTLPPNVGAGSQTQNSSSVGFKLMLIKTVPKLISAFMKLE*

Protein Length: 88

Fln nts: TTCTCCTATCATGCAAGTCA_-_ATGTTGTACATACTACGCAAGCCCCCAAAGCATTTTGAAATGTTAGTTAAAGAGCATTTTAGAAAACGCGGTCATTATATTCTCCGTGCCTGTGATGCCTATCTGAAAGGGGCTCCAGTTGGATCGCTTTCAGAAGATTGTACGTTGCCGCCCAATGTTGGAGCAGGGTCTCAGACTCAGAATAGTAGTTCTGTTGGGTTCAAGCTTATGTTGATTAAAACTGTTCCCAAACTTATTTCAGCCTTCATGAAGCTGGAGTAG___ATTGCCAAGAATTTCAGCAGACAATAGCCAAAGAATCCAAGGGACTCTGAGAATTTTAGATGTGTGGTTATTTCTTTCAAATGATTTACATGGCGTTCAAGAGCTCATGTACAGTTGCAGAAGGTTTTAGATTGTGGATTATATTATACATTTACCACATTCTTGCTTATCTTATGTTTATGTTTAAATGTGATTACATATTATCGTGATTTTGGGAAAAAAAAAAAAACACAAAAAAAAAAAAAAAAAAAAAAAAC

Fln Alignment:

uma_euler_27098___PKHFEMLVKEHFRKRGHYILRACDAYLKGAPVGSLSEDCTLPPNVGAGSQTQNSSSVGFKLMLIKTVPKLISAFMKL
A9P2M6_______________PKHFESFVREHFHQRGHYILGACNAYMMGAQVGCLSGEAMM--GVHGRADTQSTSSIGFKIMLAKLIPKLVLAFKEV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain