SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92082

Length: 1126 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene92082 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CjMDR1 n=1 Tax=Coptis japonica RepID=Q94IH6_COPJA	-	-	77%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	73%
Blast2go	mdr-like abc transporter	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATPase activity	GO:0016887	Molecular Function	0.0	87%
Blast2go	cell part	GO:0044464	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-
Sma3		IPR013596	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 716 aas, your sequence is shorter than subject: 375 - 1316

Fln protein: ILAGVLIAFSANWKLAFLILGLLPLLGLQGWVQVKFMQGFSGDSKVMYEEASQVANDAVGSIRTVASFSAEDKVMSLYNEKCSVPLKGGIRQGIISGLGLGIANFLLxxxIGGQAC*LRNPHGSHCESEKDPENSVFEILDRKSKIDASDVSGTTLENVKGDIEFRHVSFKYATRPDIQIFRDLSLSVHSGKTVALVGESGSGKSTVISLLERFYDPDSGRILLDGVEIQKLQLKWLRQQMGLVSQEPILFNDSIRANIAYGKEGIVSDEQIIIAAEASNAHKFISRLPQGYDTSVGERGVQLSGGQKQRIAIARAIIKDPSILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKDADLIAVVKN

Protein Length: 376

Fln nts: ATCCTTGCTGGTGTTCTTATAGCTTTTTCAGCGAACTGGAAGTTGGCATTTTTGATATTGGGTCTTCTGCCTCTGCTAGGTCTTCAAGGTTGGGTTCAAGTGAAGTTCATGCAGGGCTTTTCTGGTGATTCAAAGGTGATGTATGAGGAAGCCAGTCAGGTTGCAAATGATGCTGTTGGAAGCATTCGCACTGTTGCCTCCTTTTCTGCAGAGGACAAGGTGATGAGCCTCTACAATGAAAAATGCTCTGTTCCCTTGAAAGGTGGAATTCGGCAAGGAATTATAAGTGGACTTGGTCTTGGAATAGCAAATTTCCTATTGTTxxxxxxTATCGGGGGCCAGGCCTGCTGACTGAGAAACCCCCATGGCAGCCATTGTGAGAGCGAAAAAGACCCTGAAAACTCAGTGTTTGAAATACTTGATCGGAAATCCAAAATTGATGCAAGTGATGTCTCAGGGACTACCTTAGAAAATGTAAAAGGCGACATTGAGTTTCGCCATGTTAGCTTTAAATATGCTACTCGCCCAGACATACAAATTTTCCGCGATTTAAGCCTTTCTGTCCATTCTGGAAAGACTGTTGCTCTTGTGGGAGAAAGTGGAAGTGGAAAATCAACTGTCATTTCACTTTTGGAACGATTCTATGATCCTGACTCAGGCCGCATATTACTTGATGGCGTTGAAATCCAAAAACTGCAACTTAAATGGTTGAGGCAACAAATGGGCTTGGTTAGCCAGGAGCCTATTTTGTTTAATGATTCAATTCGTGCAAATATTGCTTATGGAAAGGAGGGAATTGTTTCTGATGAACAGATTATAATAGCTGCTGAGGCTTCCAATGCTCATAAGTTCATCTCAAGGCTTCCCCAAGGATATGACACATCTGTGGGGGAGCGGGGCGTGCAGTTATCTGGAGGACAGAAGCAGCGGATAGCAATTGCAAGAGCAATAATTAAAGACCCTAGCATACTATTGTTAGATGAAGCTACAAGTGCATTGGATGCTGAATCTGAGCGTGTTGTTCAAGATGCGTTGGATCGTGTAATGGTAAACAGGACCACTATTGTTGTTGCTCATCGTCTTTCAACAATTAAAGATGCAGATCTCATAGCTGTGGTGAAGAATGG

Fln Alignment:

uma_euler_24854___ILAGVLIAFSANWKXXXXXXXXXXXXXXXGWVQVKFMQGFSGDSKVMYEEASQVANDAVGSIRTVASFSAEDKVMSLYNEKCSVPLKGGIRQGIISGLGLGIANFLLFxxIGGQAC*LRNPHGSHCESEKDPENSVFEILDRKSKIDASDVSGTTLENVKGDIEFRHVSFKYATRPDIQIFRDLSLSVHSGKTVALVGESGSGKSTVISLLERFYDPDSGRILLDGVEIQKLQLKWLRQQMGLVSQEPILFNDSIRANIAYGKEGIVSDEQIIIAAEASNAHKFISRLPQGYDTSVGERGVQLSGGQKQXXXXXXXXIKDPSILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKDADLIAVVK
E6Y0T0_______________IIAGIVISFTANWLLALLILAIVPLLGLQGYMQVKFMTGFTADAKLVYEEASQVANDAVGSIRTVASFCAEDKVISLYNEKCSAPLKSGVKQGIIAGLGLGFSNFVMFxxMGGMSLGQTSPSLNAFSAGRAAAYKMFETIDRKPVIDVFDKSGLVLEDIQGDIELKDVRFTYPARPDVQVFSGFSLEIPSGTTAALVGESGSGKSTVISLVERFYDPQAGEVLIDGINIKKFQLKWIRQKIGLVSQEPVLFGTTIKENLLYGKDG-ATLEEIKAAAELANAAKFINKLPQGFDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDTESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain