SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92071

Length: 501 nt

UniGene Fasta

>sp_v2.0_unigene92071
CCATGAGGCAATTGCCATTAAGAGAATGCATACACGGTATCCAGAAAACTTGCATGCATTTGAAGTTGAGTTAAATACTGCTGGAAGCATCAAGCATAGGAATCTTGTTAGTTTGCTGGGATACTCTCTTTCTCCACATGGAAACTTGTTGTTCTATGACTACATGGCTAATGGAAGTTTGAAGGACATCTTACATGGATCTTCAAATAGGATAGACTGGAATACTCGTTTAAGGATTGCTCTTGGAGCTGCACAAGGTCTAGCATATCTGCATCATGATTGTAACCCACGTATTATTCATAGAGATGTAAAGACTTCCAACATCCTCTTAGATGAGAATTTTGAAGCACATTTGGCAGATTTTGGAATTGCCAAGTGTATCTCCTCTGTTGAAACCCACACCTGTACCGATGTAATGGGTACCATTGGTTACATTGACCCAGAATATGCAAGGACATTGAAGCTTACTGAGAAATCTGACGTGTACAGTTATGGCATTGT

Ace file of the UniGene sp_v2.0_unigene92071

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like protein kinase (Fragment) n=1 Tax=Elaeis guineensis RepID=Q84XU6_ELAGV	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	leucine-rich repeat protein kinase	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPH3

Fln msg: Distance to subject end: 95 aas, your sequence is shorter than subject: 166 - 360

Fln protein: HEAIAIKRMHTRYPENLHAFEVELNTAGSIKHRNLVSLLGYSLSPHGNLLFYDYMANGSLKDILHGSSNRIDWNTRLRIALGAAQGLAYLHHDCNPRIIHRDVKTSNILLDENFEAHLADFGIAKCISSVETHTCTDVMGTIGYIDPEYARTLKLTEKSDVYSYGI

Protein Length: 167

Fln nts: CCATGAGGCAATTGCCATTAAGAGAATGCATACACGGTATCCAGAAAACTTGCATGCATTTGAAGTTGAGTTAAATACTGCTGGAAGCATCAAGCATAGGAATCTTGTTAGTTTGCTGGGATACTCTCTTTCTCCACATGGAAACTTGTTGTTCTATGACTACATGGCTAATGGAAGTTTGAAGGACATCTTACATGGATCTTCAAATAGGATAGACTGGAATACTCGTTTAAGGATTGCTCTTGGAGCTGCACAAGGTCTAGCATATCTGCATCATGATTGTAACCCACGTATTATTCATAGAGATGTAAAGACTTCCAACATCCTCTTAGATGAGAATTTTGAAGCACATTTGGCAGATTTTGGAATTGCCAAGTGTATCTCCTCTGTTGAAACCCACACCTGTACCGATGTAATGGGTACCATTGGTTACATTGACCCAGAATATGCAAGGACATTGAAGCTTACTGAGAAATCTGACGTGTACAGTTATGGCATTGT

Fln Alignment:

uma_euler_24499___HEAIAIKRMHTRYPENLHAFEVELNTAGSIKHRNLVSLLGYSLSPHGNLLFYDYMANGSLKDILHGSSNR---IDWNTRLRIALGAAQGLAYLHHDCNPRIIHRDVKTSNILLDENFEAHLADFGIAKCISSVETHTCTDVMGTIGYIDPEYARTLKLTEKSDVYSYGI
B8LPH3_______________HTVFAIKRLTRNSIDQQRGFERELDAMGDIKHRNVVTLRGYYSSSHVNLLVYDLMQNGSLDGILHSRSPNKVSLDWAARNKIALGSARGIAYLHHDCIPHIIHRDIKSSNILLDEEMEARISDFGLATLINPDQTHVSTIVAGTFGYLAPEYVETGRATEKGDVYSYGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain