SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92057

Length: 536 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene92057
AATATAAAATCTCTCATTTATGATATGTTTTCCGCTGGGTCGGCTACATCCTCTGCCAGCATAGCGTGGGCAATCTCCGAATTGCTAAGAAACCCGCCAGTGATGAAGAAACTTCAGGACGAGCTGGAACGCGTCGTTGGATTGGATCGCATGGTATGCGAATCTGATTTGCCTCAGCTCGTTTATTTACAAGCTATGGTAAAAGAAACGCTTCGACTCCACCCAGCGGGGCCTCTTTTGAACCGTCGCTTATCCGCTGAGTCCTGCAATGTGTTGGGGTACGAATTCCCTAAAAACACTCGTGTTCTAGTTAATGCTTGGGCGATTGGGAGGAACCTAAAGTTATGGGAGGACGCCGAGACTTTCAAGCCAGAAAGATTCATGGGAAGAGTTGGCTCGGAGGTAGATGCAAATGGAGATCAAAGCTTTGCGTGGCTTGCCTTCGGAGCAGGGAGGAGAACATGCCCCGGACGACAATTGGGAACGCTTTTGGTAGAGTTTGCGTTCGCGCAACTCTTTCACTGCTTCAACTGGAG

Ace file of the UniGene sp_v2.0_unigene92057 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[Q] COG2124 Cytochrome P450	-	-	1.0e-13	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	cytochrome p450	-	-	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNX9

Fln msg: Distance to subject end: 45 aas, your sequence is shorter than subject: 178 - 462

Fln protein: NIKSLIYDMFSAGSATSSASIAWAISELLRNPPVMKKLQDELERVVGLDRMVCESDLPQLVYLQAMVKETLRLHPAGPLLNRRLSAESCNVLGYEFPKNTRVLVNAWAIGRNLKLWEDAETFKPERFMGRVGSEVDANGDQSFAWLAFGAGRRTCPGRQLGTLLVEFAFAQLFHCFNW

Protein Length: 179

Fln nts: AATATAAAATCTCTCATTTATGATATGTTTTCCGCTGGGTCGGCTACATCCTCTGCCAGCATAGCGTGGGCAATCTCCGAATTGCTAAGAAACCCGCCAGTGATGAAGAAACTTCAGGACGAGCTGGAACGCGTCGTTGGATTGGATCGCATGGTATGCGAATCTGATTTGCCTCAGCTCGTTTATTTACAAGCTATGGTAAAAGAAACGCTTCGACTCCACCCAGCGGGGCCTCTTTTGAACCGTCGCTTATCCGCTGAGTCCTGCAATGTGTTGGGGTACGAATTCCCTAAAAACACTCGTGTTCTAGTTAATGCTTGGGCGATTGGGAGGAACCTAAAGTTATGGGAGGACGCCGAGACTTTCAAGCCAGAAAGATTCATGGGAAGAGTTGGCTCGGAGGTAGATGCAAATGGAGATCAAAGCTTTGCGTGGCTTGCCTTCGGAGCAGGGAGGAGAACATGCCCCGGACGACAATTGGGAACGCTTTTGGTAGAGTTTGCGTTCGCGCAACTCTTTCACTGCTTCAACTGGAG

Fln Alignment:

uma_euler_24106___NIKSLIYDMFXXXXXXXXXXXXXXXSELLRNPPVMKKLQDELERVVGLDRMVCESDLPQLVYLQAMVKETLRLHPAGPLLNRRLSAESCNVLGYEFPKNTRVLVNAWAIGRNLKLWEDAETFKPERFMGRVGSEVDANGDQSFAWLAFGAGRRTCPGRQLGTLLVEFAFAQLFHCFNW
B8LNX9_______________SIKGVLFDMLLGGSDTAPTAIEWAMSEALRNPPVMKKLQDELERVVGLGRMVCESDLPRLVYLQAVVKETLRLYPSGPFLTRHLSAASCNVLGYEIPHDTVVLVNDWAIGRDRNSWEDAENFIPERFMERVGSEVDANGDQNFACLLFGGGRRRCPGQQLGTLIVEFGLAQLLHCFNW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain