SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene92022

Length: 563 nt

UniGene Fasta

>sp_v2.0_unigene92022
AGAGATATTCTCAATCCTGCAACTGTGGCTGCTTCTGGATCTAAGCCATGGCTCTACTATTCCTTGCATGCTTTTCTAGTCTTTTCATTCAATCTCTTGGACATTGCCAACTGGCCTAAAGAAATATCCAATTACATGATCAAAATGGGAGCGAGAATACCTAATATTAAACCTGGTCGTGCCACTACAGAATATTTGGCAAAGGAGGATTGTTACTGAGTCTTTTAGCTACATTATCAACGTTGATGGATCATCAATTTCGACATATCAATGAGGGTTTCTCAATTGGATTTACTTCTGTTCTTATAATTGTTGGTTCAATCATAGAGCTGAGGAGATCTTATCAGGCTTATAATGTAATGCCTACATTGAGCAAGGTCTTGAAACGATATGGAGCATAATGCTCCTTGTAAACATGGCACCTTCCATAAAACTGAAGTGTGAGGAAAAGTCTAAATTTTCATGTCTAGATCATTCAAGCCCGGGTTTAACCATCAACATCAAGCTTTTGACAAGTTTTGTCCATGGGAGTTTAAAGAGGGAAGAAACTGAATTGAATAAAA

Ace file of the UniGene sp_v2.0_unigene92022

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative preprotein translocase SECY protein [Arabidopsis thaliana]	-	-	5.0e-38	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	preprotein translocase subunit secy-like	-	-	1.11162e-37	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid envelope	GO:0009526	Cellular Component	1.11162e-37	80%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	BTB/POZ	IPR013069	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TPF0

Fln msg: Separated hits, possible frame ERROR between 204 and 246, your sequence is shorter than subject: 134 - 613

Fln protein: RDILNPATVAASGSKPWLYYSLHAFLVFSFNLLDIANWPKEISNYMIKMGARIPNIKPGRATTEYLAxxxxxxxxxxxxxxxMDHQFRHINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPTLSKVLKRYGA*

Protein Length: 135

Fln nts: AGAGATATTCTCAATCCTGCAACTGTGGCTGCTTCTGGATCTAAGCCATGGCTCTACTATTCCTTGCATGCTTTTCTAGTCTTTTCATTCAATCTCTTGGACATTGCCAACTGGCCTAAAGAAATATCCAATTACATGATCAAAATGGGAGCGAGAATACCTAATATTAAACCTGGTCGTGCCACTACAGAATATTTGGCAAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGATGGATCATCAATTTCGACATATCAATGAGGGTTTCTCAATTGGATTTACTTCTGTTCTTATAATTGTTGGTTCAATCATAGAGCTGAGGAGATCTTATCAGGCTTATAATGTAATGCCTACATTGAGCAAGGTCTTGAAACGATATGGAGCATAATGCTCCTTGTAAACATGGCACCTTCCATAAAACTGAAGTGTGAGGAAAAGTCTAAATTTTCATGTCTAGATCATTCAAGCCCGGGTTTAACCATCAACATCAAGCTTTTGACAAGTTTTGTCCATGGGAGTTTAAAGAGGGAAGAAACTGAATTGAATAAAA

Fln Alignment:

uma_euler_23165___RDILNPATVAASGSKPWLYYSLHAFLVFSFNLLDIANWPKEISNYMIKMGARIPNIKPGRATTEYLAKxxxxxxxxxxxxxxMDHQFRHINEGFSIGFTSVLIIVGSIIELRRSYQAYNVMPTLSKVLKRYG
D7TPF0_______________KEILNPET--SIGAEPWVYYSIYAFFVFVFNIFDIANMPKEIADYLNKMGARIPNIKPGKATIAYLTKxxxxxxxxxxxxxxLDHYLRRINQGFSIGFTSVLIIVGSIIELRRSYQAYNVMPDLSKALRRYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain