SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91966

Length: 445 nt

UniGene Fasta

>sp_v2.0_unigene91966
GGCTTATGGACTATGCCTTCCAATATATAATAGATAATGGAGGCATCTCTACTGAAGATGCGTATCCTTATACTGCCGAAGCGGGCGAGTGCAGTACAACCAAGATTAAATCGAAAGCAACAACAATAGTTATTGATGGCTTCGAAGATGTCCCTTCAAACAATGAAGAAGCTCTCAAGAAAGCAGTGGCTCATCAACCAGTGTCTGTAGCCATTGAAGCAAGTGGACGAGATTTCCAATTCTATTTAAAGGGAGTATTCACTGGTAAATGTGGCACTGAACTTGATCATGGAGTTGTAGTGGTGGGGTATGGCAAGACTTCTGAAGGAATCAATTACTGGATAGTTAGAAACTCTTGGGGAGATGAATGGGGAGAAAAAGGATATATAAGAATGAGTCGAAATATTAAGGCGACTGAAGGTAAGTGTGGTATTGCCATGCAAGC

Ace file of the UniGene sp_v2.0_unigene91966

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	papain-like cysteine protease [Sandersonia aurantiaca]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	cysteine proteinase	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Anaphylatoxin/fibulin	IPR000020	-	-
Sma3	Granulin	IPR000118	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase C1A, papain C-terminal	IPR000668	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Peptidase C1A, papain	IPR013128	-	-
Sma3	Proteinase inhibitor I29, cathepsin propeptide	IPR013201	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR018069	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-
Sma3	Ribosomal protein L29, conserved site	IPR018254	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMA7

Fln msg: Distance to subject end: 23 aas, your sequence is shorter than subject: 147 - 372

Fln protein: LMDYAFQYIIDNGGISTEDAYPYTAEAGECSTTKIKSKATTIVIDGFEDVPSNNEEALKKAVAHQPVSVAIEASGRDFQFYLKGVFTGKCGTELDHGVVVVGYGKTSEGINYWIVRNSWGDEWGEKGYIRMSRNIKATEGKCGIAMQ

Protein Length: 148

Fln nts: GGCTTATGGACTATGCCTTCCAATATATAATAGATAATGGAGGCATCTCTACTGAAGATGCGTATCCTTATACTGCCGAAGCGGGCGAGTGCAGTACAACCAAGATTAAATCGAAAGCAACAACAATAGTTATTGATGGCTTCGAAGATGTCCCTTCAAACAATGAAGAAGCTCTCAAGAAAGCAGTGGCTCATCAACCAGTGTCTGTAGCCATTGAAGCAAGTGGACGAGATTTCCAATTCTATTTAAAGGGAGTATTCACTGGTAAATGTGGCACTGAACTTGATCATGGAGTTGTAGTGGTGGGGTATGGCAAGACTTCTGAAGGAATCAATTACTGGATAGTTAGAAACTCTTGGGGAGATGAATGGGGAGAAAAAGGATATATAAGAATGAGTCGAAATATTAAGGCGACTGAAGGTAAGTGTGGTATTGCCATGCAAGC

Fln Alignment:

uma_euler_21461___LMDYAFQYIIDNGGISTEDAYPYTAEAGECXXXXXXXXXXXXVIDGFEDVPSNNEEALKKAVAHQPVSVAIEASGRDFQFYLKGVFTGKCGTELDHGVVVVGYGKTSEGINYWIVRNSWGDEWGEKGYIRMSRNIKATEGKCGIAMQ
B8LMA7_______________LMDNAFQYIIDNGGIVTEDEYPYTAEAGECSTTKIESKSIATIIDGFEDVPANNEGALKKAVAHQPVSIAIEASGHDFQFYSTGVFTGKCGTELDHGVVVVGYGKSPEGINYWIVRNSWGPEWGEQGYIRMQRGIEATEGKCGISMQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain