SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91744

Length: 339 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91744
GAGATGGCGACTCTGGGAGATATTGCAGTATCGGGAGTCATAAATCTTTTGTCCGCCTTTGTCTTTCTGTTGGCATTTGCATTTCTAAGGTTGCAGCCCATAAACAGCAGAGTTTACTTTCCCAAATGGTATCTCAAGGGCACCGGGCAAAACCCCAAGAACTTAAGACCAACTATAAGCAAGTTTGTGAATTTGAACCACAGAACGTACTCGCAATTTCTGAGCTGGATGCCAGAGGCCCTCAGAATGCCAGAATCGGAGCTCGTTAATCATGCAGGTCTTGATTCTGTTGTTTACCTGCGGATCTACCTTGTGGGTCTGAAAATCTTTGTACCTTTG

Ace file of the UniGene sp_v2.0_unigene91744 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	early-responsive to dehydration stress-related protein [Arabidopsis thaliana] dbj\|BAB02357.1\| unnamed protein product [Arabidopsis thaliana] gb\|AEE76531.1\| early-responsive to dehydration stress-related protein [Arabidopsis thaliana]	-	-	8.0e-30	58%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	68%
Blast2go	uncharacterized membrane	-	-	5.7808e-36	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.7808e-36	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	0.0	-
Sma3	Domain of unknown function DUF221	IPR003864	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9N8E6

Fln msg: Distance to subject end: 663 aas, your sequence is shorter than subject: 112 - 775

Fln protein: MATLGDIAVSGVINLLSAFVFLLAFAFLRLQPINSRVYFPKWYLKGTGQNPKNLRPTISKFVNLNHRTYSQFLSWMPEALRMPESELVNHAGLDSVVYLRIYLVGLKIFVPL

Protein Length: 113

Fln nts: GAG_-_ATGGCGACTCTGGGAGATATTGCAGTATCGGGAGTCATAAATCTTTTGTCCGCCTTTGTCTTTCTGTTGGCATTTGCATTTCTAAGGTTGCAGCCCATAAACAGCAGAGTTTACTTTCCCAAATGGTATCTCAAGGGCACCGGGCAAAACCCCAAGAACTTAAGACCAACTATAAGCAAGTTTGTGAATTTGAACCACAGAACGTACTCGCAATTTCTGAGCTGGATGCCAGAGGCCCTCAGAATGCCAGAATCGGAGCTCGTTAATCATGCAGGTCTTGATTCTGTTGTTTACCTGCGGATCTACCTTGTGGGTCTGAAAATCTTTGTACCTTTG

Fln Alignment:

uma_euler_15302___MATLGDIAVSGVINXXXXXXXXXXXXXXXLQPINSRVYFPKWYLKGTGQNPKNLRPTISKFVNLNHRTYSQFLSWMPEALRMPESELVNHAGLDSVVYLRIYLVGLKIFVPL
B9N8E6_______________MATLEDIGVSAAINLLSALIFLFLFAILRLQPFNDRVYFPKWYLKGLRNSPSRSRALVSRFVNLDCRSYIQFLNWMPQALKMPEPELIDHAGLDSAVYLRIYLMGLKIFVPI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain