SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91734

Length: 517 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91734
GATCTAAACGTGTATCAAATGTTGCCTACAACATAGTAAATGGGGAGTGTACACCTGTGTTCGATCAATCTTCACCTGTTTACCTTAATGTTGGTGATGGAGGAAATATCGAAGGCCTTGCAAACAACTTTACTGAACCACAGCCCCAGTATTCAGCATTCCGCGAAGCTAGCTTTGGCCATGCAATCCTTGAAATTAAAAACACAACACATGCTCACTACCACTGGCATCGTAATCAAGATCGAGAAGCTGTCGTTGGTGATTCCCAATGGCTTTATAACAGATATTGGTACCCCCATGATGAATGAACCTACATCACAAAGCTAAAATTACTCAGCTGTTTGCAGTATCCATGGAATCGAAAGGAATTGGATATAGTGGCAAGTATGGTCAAGAGTTGTACTGTGGACATTACAAATCAATAAACACTCTATTAATGTTGCTGTAACACTGAAATCTCAGGTCAATTCTAAGTTTTGCCCATAAATTTGCAATCACCGTTTTATGTAATACTTTG

Ace file of the UniGene sp_v2.0_unigene91734 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	purple acid phosphatase [Ipomoea batatas]	-	-	9.99995e-41	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Blast2go	purple acid phosphatase	-	-	0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Fibronectin, type III	IPR003961	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Fatty acid hydroxylase	IPR006694	-	-
Sma3	Purple acid phosphatase, N-terminal	IPR015914	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP18

Fln msg: your sequence is shorter than subject: 102 - 151

Fln protein: SKRVSNVAYNIVNGECTPVFDQSSPVYLNVGDGGNIEGLANNFTEPQPQYSAFREASFGHAILEIKNTTHAHYHWHRNQDREAVVGDSQWLYNRYWYPHDE*

Protein Length: 103

Fln nts: GATCTAAACGTGTATCAAATGTTGCCTACAACATAGTAAATGGGGAGTGTACACCTGTGTTCGATCAATCTTCACCTGTTTACCTTAATGTTGGTGATGGAGGAAATATCGAAGGCCTTGCAAACAACTTTACTGAACCACAGCCCCAGTATTCAGCATTCCGCGAAGCTAGCTTTGGCCATGCAATCCTTGAAATTAAAAACACAACACATGCTCACTACCACTGGCATCGTAATCAAGATCGAGAAGCTGTCGTTGGTGATTCCCAATGGCTTTATAACAGATATTGGTACCCCCATGATGAATGA___ACCTACATCACAAAGCTAAAATTACTCAGCTGTTTGCAGTATCCATGGAATCGAAAGGAATTGGATATAGTGGCAAGTATGGTCAAGAGTTGTACTGTGGACATTACAAATCAATAAACACTCTATTAATGTTGCTGTAACACTGAAATCTCAGGTCAATTCTAAGTTTTGCCCATAAATTTGCAATCACCGTTTTATGTAATACTTTG

Fln Alignment:

uma_euler_15074___SKRVSNVAYNIVNGECTPVFDQSSPVYLNVGDGGNIEGLANNFTEPQPQYSAFREASFGHAILEIKNTTHAHYHWHRNQDREAVVGDSQWLYNRYWYPHDE*T
B8LP18_______________SKRVSNVAYNIVNRECTPIFDPSSPVYITIGDGGNVEGLAANFTEPQPKYSAFREASFGHAILEIKNRTHAFYHWHRNQDGDAVVGDSQWLYNRYSYPHNEPT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain