SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91702

Length: 442 nt

UniGene Fasta

>sp_v2.0_unigene91702
AGGGTGCAAACATTCTTGTCGACAACAAAGGGTGCATCAAATTAGCAGACTTTGGTGCGTCCAAGAAAGTTGTTGAGCTGGCCACGATTACAGGGGCCAAGTCAATGAAAGGAACTCCATATTGGATGGCACCAGAAGTCATTCGCCAAACAGGGCATAGCTTGCCTGCTGATATATGGAGCGTTGGTTGTACTGTTATTGAAATGGCAACAGGCAAACCTCCATGGAGCCAGCAATTTCAAGAGGTGGCTGCATTATTTCATATTGGAACAACAAAGTCACACCCACCAATTCCAGATCATATCTCACCAGAGGCAAAAGATTTTCTACTGAAATGTTTGAAGAAAGAACCAAATTTGAGGCCCACTGCAGCTGAATTGCTTCAGCATCCTTTTGTCGTTGGCAACTACCGTGATCCACATCCTCTTGTTAGGTCCTCTGC

Ace file of the UniGene sp_v2.0_unigene91702

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase kinase kinase 3, mapkkk3, mekk3, putative n=1 Tax=Ricinus communis RepID=B9RTY0_RICCO	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	cortical microtubule organization	GO:0043622	Biological Process	91%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	91%
Blast2go	protein binding	GO:0005515	Molecular Function	91%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Paired amphipathic helix	IPR003822	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	DNA repair metallo-beta-lactamase	IPR011084	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3		IPR015748	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Transcription regulator, HTH DeoR-type, conserved site	IPR018356	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LR19

Fln msg: Distance to subject end: 201 aas, your sequence is shorter than subject: 146 - 902

Fln protein: GANILVDNKGCIKLADFGASKKVVELATITGAKSMKGTPYWMAPEVIRQTGHSLPADIWSVGCTVIEMATGKPPWSQQFQEVAALFHIGTTKSHPPIPDHISPEAKDFLLKCLKKEPNLRPTAAELLQHPFVVGNYRDPHPLVRSS

Protein Length: 147

Fln nts: AGGGTGCAAACATTCTTGTCGACAACAAAGGGTGCATCAAATTAGCAGACTTTGGTGCGTCCAAGAAAGTTGTTGAGCTGGCCACGATTACAGGGGCCAAGTCAATGAAAGGAACTCCATATTGGATGGCACCAGAAGTCATTCGCCAAACAGGGCATAGCTTGCCTGCTGATATATGGAGCGTTGGTTGTACTGTTATTGAAATGGCAACAGGCAAACCTCCATGGAGCCAGCAATTTCAAGAGGTGGCTGCATTATTTCATATTGGAACAACAAAGTCACACCCACCAATTCCAGATCATATCTCACCAGAGGCAAAAGATTTTCTACTGAAATGTTTGAAGAAAGAACCAAATTTGAGGCCCACTGCAGCTGAATTGCTTCAGCATCCTTTTGTCGTTGGCAACTACCGTGATCCACATCCTCTTGTTAGGTCCTCTGC

Fln Alignment:

uma_euler_14326___GANILVDNKGCIKLADFGASKKVVELATITGAKSMKGTPYWMAPEVIRQ--TGHSLPADIWSVGCTVIEMATGKPPWSQQFQEVAALFHIGTTKSHPPIPDHISPEAKDFLLKCLKKEPNLRPTAAELLQHPFV
B8LR19_______________GGNILVDTYGRVKLADFGMAKHINGPAT---PLSLKGSPYWMAPEVLMQKNTGHDLAVDIWSLGCTVIEMATGKPPWS-EYEGAAAMFKVFKSEV-PPIPDSLSPEGRHFVQCCLCRNPAQRPKASQLLEHLFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain