SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91638

Length: 462 nt

UniGene Fasta

>sp_v2.0_unigene91638
GAGAATCCAATTCTCGACGCTGCGAAGAATCTCATTCCTCTTGAGCTCATCAGGGAGTTCCTCACGACAGATGGCCAAAAATTGCTGAAGTATCCCCTTCCTCAGGTTATTTCCAATGACAAATTTGCATGGAGGAAAGACGAAGAGTTTGCGCGGCAGACGTTGGCTGGTGTCGATCCGGTTGTTATACAGAGACTCAAAAGTTTTCCCCCAAGAAGTAAACTGGACCCGGGGACGTATGGTCCTCAGATCAGTTCTATTACTTCTTCACATATAGAAAAGAATATCGATGGGCTAACAGTGGAGCAGGCTCTAGAGGACAACAAGTTGTTCATTCTGGACCATCATGATGTCTTCATGCCTTATGTTAACCGAATAAATGCTCTGTCTAGAAAGATATATGCATCTCGCACAATTCTCTTCCTTAACAAGAATGGCACATTAAGGCCAGTTGCAATCGAG

Ace file of the UniGene sp_v2.0_unigene91638

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Camellia sinensis RepID=A8W7J7_CAMSI	-	-	64%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	lipoxygenase 1	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	78%
Blast2go	alpha-Linolenic acid metabolism	00592	78%
Blast2go	Biosynthesis of plant hormones	01070	78%
Blast2go	Metabolic pathways	01100	78%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	78%
Blast2go	response to wounding	GO:0009611	Biological Process	78%
Blast2go	growth	GO:0040007	Biological Process	78%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	78%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	78%
Blast2go	membrane disassembly	GO:0030397	Biological Process	78%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	78%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	78%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PT31

Fln msg: Distance to subject end: 388 aas, your sequence is shorter than subject: 154 - 924

Fln protein: ENPILDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINALSRKIYASRTILFLNKNGTLRPVAIE

Protein Length: 155

Fln nts: GAGAATCCAATTCTCGACGCTGCGAAGAATCTCATTCCTCTTGAGCTCATCAGGGAGTTCCTCACGACAGATGGCCAAAAATTGCTGAAGTATCCCCTTCCTCAGGTTATTTCCAATGACAAATTTGCATGGAGGAAAGACGAAGAGTTTGCGCGGCAGACGTTGGCTGGTGTCGATCCGGTTGTTATACAGAGACTCAAAAGTTTTCCCCCAAGAAGTAAACTGGACCCGGGGACGTATGGTCCTCAGATCAGTTCTATTACTTCTTCACATATAGAAAAGAATATCGATGGGCTAACAGTGGAGCAGGCTCTAGAGGACAACAAGTTGTTCATTCTGGACCATCATGATGTCTTCATGCCTTATGTTAACCGAATAAATGCTCTGTCTAGAAAGATATATGCATCTCGCACAATTCTCTTCCTTAACAAGAATGGCACATTAAGGCCAGTTGCAATCGAG

Fln Alignment:

uma_euler_12623___LDAAKNLIPLELIREFLTTDGQKLLKYPLPQVISNDKFAWRKDEEFARQTLAGVDPVVIQRLKSFPPRSKLDPGTYGPQISSITSSHIEKNIDGLTVEQALEDNKLFILDHHDVFMPYVNRINAL-SRKIYASRTILFLNKNGTLRPVAIE
C0PT31_______________LDIFKNLMLPKIMKNMLKT-GEELLRYEIPSIISRDRFAWLRDNEFGRQTLAGVNPVSIERLKEFPIFSKLDPAIYGSPESAIKSEHVEGELNGMSVEQALEEERLFILDYYDAYMPFVTKINSLKGRKVYASRTIFFLTTAGTLKPIVIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain