SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91604

Length: 1846 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene91604

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor 2 n=32 Tax=Magnoliophyta RepID=EF2_BETVU	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	elongation factor ef-2	-	-	94%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	94%
Blast2go	copper ion binding	GO:0005507	Molecular Function	94%
Blast2go	cytosol	GO:0005829	Cellular Component	94%
Blast2go	nucleolus	GO:0005730	Cellular Component	94%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	94%
Blast2go	chloroplast	GO:0009507	Cellular Component	94%
Blast2go	plasma membrane	GO:0005886	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Translation elongation factor EFG/EF2, C-terminal	IPR000640	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Translation elongation factor EFG/EF2, domain IV	IPR005517	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKZ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 132 aas, your sequence is shorter than subject: 614 - 785

Fln protein: SLVFFCFG*EEFW*IQKLGKMVKFTAEELRKIMDRKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYVMEDSAVKNFKGDREGHEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDCQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEAKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFIYEPIKQIINICMNDQKDKLWPMLQKLGVVMKSDEKELVAKALMKRVMQTWLPASSALLEMMIFHLPSPAKAQRYRVENLYEGPLDDVYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFAGRVATGMKVRIMGPNYVPGQKKDLYTKSVQRTVIWMGKRQESVEDVPCGNTVTKNATLTNEKEADAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVVSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYFEARPLEEGLAEAID

Protein Length: 615

Fln nts: GCTCATTGGTATTCTTCTGTTTTGGCTGAGAAGAGTTTTGGTGAATACAAAAGTTAGGAAAAATGGTGAAGTTCACGGCTGAAGAGCTTCGTAAAATCATGGACAGGAAGCATAACATACGAAACATGTCTGTTATTGCCCATGTTGATCACGGAAAATCCACTCTCACTGATTCTTTGGTAGCAGCAGCTGGTATCATTGCTCAAGAAGTTGCTGGAGATGTCAGAATGACTGATACTCGGGCAGATGAAGCTGAACGTGGCATCACCATCAAGTCAACTGGAATTTCGTTGTACTATGTGATGGAGGATTCAGCGGTGAAAAATTTCAAGGGGGATAGAGAAGGACACGAATATTTGATAAATCTGATTGATTCTCCAGGGCATGTTGACTTTTCTTCAGAAGTTACAGCAGCCCTGCGAATCACAGATGGTGCACTGGTTGTGGTAGATTGTATTGAAGGGGTTTGTGTCCAGACTGAGACTGTTCTTCGTCAAGCTCTTGGAGAAAGGATTAGGCCTGTTCTCACTGTGAACAAGATGGACAGGTGCTTTCTTGAGTTGCAGGTTGATGGAGAGGAAGCTTACCAAACCTTCTCACGTGTCATTGAAAATGCAAATGTGATTATGGCTACTTATGAAGATCCTCTTCTTGGTGACTGCCAAGTTTATCCTGAAAAAGGTACAGTTGCATTCTCGGCAGGTCTGCACGGGTGGGCATTTACCCTCACAAATTTTGCAAAAATGTATGCTTCAAAGTTTGGAGTGGATGAAGCAAAGATGATGGAGAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCTACAAAGAAATGGACAACCAAGAATACAGGTTCTGCAACTTGCAAAAGAGGATTTGTTCAATTCATATATGAACCTATTAAGCAAATTATCAATATTTGTATGAATGATCAAAAGGATAAGTTGTGGCCCATGTTGCAGAAATTGGGAGTTGTAATGAAAAGTGACGAGAAGGAGCTGGTTGCAAAAGCACTCATGAAGCGTGTCATGCAAACCTGGCTACCTGCAAGTAGTGCTTTACTTGAAATGATGATTTTCCATCTTCCTTCTCCAGCGAAGGCACAGAGATATCGTGTGGAAAACTTGTATGAAGGACCTCTTGATGATGTATATGCAACTGCAATAAGAAACTGTGACCCTGAGGGTCCACTGATGTTGTATGTTTCAAAAATGATTCCAGCTTCGGACAAAGGACGTTTCTTTGCCTTTGGTCGTGTTTTTGCTGGCAGAGTTGCAACAGGTATGAAGGTAAGGATCATGGGTCCCAACTATGTGCCAGGTCAGAAGAAAGATTTATATACAAAGAGTGTTCAAAGGACTGTGATATGGATGGGAAAGAGACAAGAATCTGTTGAGGATGTGCCTTGTGGAAATACAGTGACCAAAAATGCTACACTGACAAACGAGAAGGAGGCTGATGCTCATCCGATCAGAGCAATGAAGTTCTCTGTGTCCCCTGTTGTACGTGTTGCTGTGCAGTGCAAGGTGGCATCTGACCTTCCAAAACTTGTTGAAGGGCTGAAGCGTCTTGCTAAGTCGGATCCTATGGTTGTTTGTACAATTGAGGAATCTGGAGAACATATTATTGCAGGTGCAGGAGAGCTTCATCTCGAGATTTGCTTAAAAGATCTCCAAGATGATTTTATGGGTGGAGCTGAGATTGTTGTTTCTGATCCTGTTGTCTCATTTAGAGAAACTGTTTTGGAGAAATCATGCCGTACTGTTATGAGCAAGTCTCCAAATAAACATAACAGGCTTTACTTTGAAGCAAGACCTTTAGAAGAAGGTCTTGCAGAAGCAATTGATGA

Fln Alignment:

uma_euler_11748___RNMSVIAHVDHGKSTLTDSLVAAAGIIAQ--EVAGDVRMTDTRADEAERGITIKSTGISLYYVMEDSAVKNFKGDREGHEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIEN
B8LKZ4_______________RNIGIMAHIDAGKTTTTERILFYTGKNYKIGEVHDGTATMDWMEQEQERGITITSAATTCAW----------------NNHRINIIDTPGHVDFTLEVERALRVLDGSICLFDSVAGVEPQSETVWRQADRYGVPRICFVNKMDRL-------GANFFRTRDMIITN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain