SustainPineDB

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Assembly info
Unigenes
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91287

Length: 527 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91287
CAGGCCTCGCCAATTCCCGGAAGTTCCACAAGCCCAAGCAACCTCGCCATTGCTACTTGGCTTCCTCGGGTGAAATACCATACAAACCCCCTTTCACACGGGACAACAAATACTATTTCTTCCGGCCCATGTCAATGGATTGCTTATATAAATTCATTCGTTGAAACCCTTTTCTTCATTCTTCAGGAGGCGTTAAGATTGATTGGGGTTATCATAATTGTGAATTCTGGTAGAGGAGAATTGTCTGCCTAGCATTAAGTACCGAGAGAAAATTGTTGGGAAAGCAGCATCTCAAATGGGGAGGTTATATTTGGTTCAGTTAAGCGGGCGGATTTACTGCTGCCGATCATGCCATAGCCATCTTGCAAATATTGATCAGATCCTGTCCAAGACATTTCACTGTAGGCATGGGAAGGCATATCTCTTTAATACTGTGGTGAACGTGTCTGCTGGGCTGTTAGAGGACAGGATGATGACTACTGGATTGCACACTGTTTCCGACATCCACTGTAACTACTGCTATGCAA

Ace file of the UniGene sp_v2.0_unigene91287 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	yippee-like protein [Arabidopsis thaliana] gb\|AEC09781.1\| yippee-like protein [Arabidopsis thaliana]	-	-	3.0e-21	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Yippee-like protein	IPR004910	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZ57

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 77 - 129

Fln protein: MGRLYLVQLSGRIYCCRSCHSHLANIDQILSKTFHCRHGKAYLFNTVVNVSAGLLEDRMMTTGLHTVSDIHCNYCYA

Protein Length: 78

Fln nts: CAGGCCTCGCCAATTCCCGGAAGTTCCACAAGCCCAAGCAACCTCGCCATTGCTACTTGGCTTCCTCGGGTGAAATACCATACAAACCCCCTTTCACACGGGACAACAAATACTATTTCTTCCGGCCCATGTCAATGGATTGCTTATATAAATTCATTCGTTGAAACCCTTTTCTTCATTCTTCAGGAGGCGTTAAGATTGATTGGGGTTATCATAATTGTGAATTCTGGTAGAGGAGAATTGTCTGCCTAGCATTAAGTACCGAGAGAAAATTGTTGGGAAAGCAGCATCTCAA_-_ATGGGGAGGTTATATTTGGTTCAGTTAAGCGGGCGGATTTACTGCTGCCGATCATGCCATAGCCATCTTGCAAATATTGATCAGATCCTGTCCAAGACATTTCACTGTAGGCATGGGAAGGCATATCTCTTTAATACTGTGGTGAACGTGTCTGCTGGGCTGTTAGAGGACAGGATGATGACTACTGGATTGCACACTGTTTCCGACATCCACTGTAACTACTGCTATGCAA

Fln Alignment:

uma_euler_5922___MGRLYLVQLSGRIYCCRSCHSHLANIDQILSKTFHCRHGKAYLFNTVVNVSAGLLEDRMMTTGLHTVSDIHCNYCYA
A9NZ57_______________MGRLYLVQLSGRIYCCRSCHSHLANIDQILSKTFHCKHGKAYLFNTVVNVSAGLLEERMMTTGLHTVADIHCNYCYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain