SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91257

Length: 467 nt

UniGene Fasta

>sp_v2.0_unigene91257
AGCTGAGCGGCTCCCAGATTCCCTCCGCGGCTTGACGAATCCTCAAACCCTTGAATATTTTGGCTCCTACCGCTACGAGACAACCAGATTCCCTTGGCGGCTTGACAAGCCTACAAGGTCTGATCTTGTCAGACTGCTCCCACTTGCAGAGGCTCCCAGACTCCTGTGGCAACTCAGCGAACCTCCAAAGGATTGACTTCTTCGGCTGCTCCAGTTTGCAAGGGTTATCAGGTTCGTTTGGCAACTTAACGAGTCGTTACTTGTCCACCTGCTCCTAAATTCTGCATTTAAAAAGCAAATCTTTGCAAATACTCTCATTCAGTCTGCTGAGGAGCTTGAAGGAATTGAAGCGTAACTTTTGCTACGGATTGAAATGTCTACTCGATTCTATTAGAATGTTGGCTCTCAGTCGAACAATCAGTGTTGAAAATAGAGGGTTGTCAGCGAAGCAACCAGCCACGAAAAAA

Ace file of the UniGene sp_v2.0_unigene91257

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	1.0e-12	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	tir-nbs-lrr class disease resistance protein	-	-	3.52914e-13	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 92 - 1071

Fln protein: LSGSQIPSAA*RILKPLNILAPTATRQPDSLGGLTSLQGLILSDCSHLQRLPDSCGNSANLQRIDFFGCSSLQGLSGSFGNLTSRYLSTCS*

Protein Length: 93

Fln nts: AGCTGAGCGGCTCCCAGATTCCCTCCGCGGCTTGACGAATCCTCAAACCCTTGAATATTTTGGCTCCTACCGCTACGAGACAACCAGATTCCCTTGGCGGCTTGACAAGCCTACAAGGTCTGATCTTGTCAGACTGCTCCCACTTGCAGAGGCTCCCAGACTCCTGTGGCAACTCAGCGAACCTCCAAAGGATTGACTTCTTCGGCTGCTCCAGTTTGCAAGGGTTATCAGGTTCGTTTGGCAACTTAACGAGTCGTTACTTGTCCACCTGCTCCTAAATTCTGCATTTAAAAAGCAAATCTTTGCAAATACTCTCATTCAGTCTGCTGAGGAGCTTGAAGGAATTGAAGCGTAACTTTTGCTACGGATTGAAATGTCTACTCGATTCTATTAGAATGTTGGCTCTCAGTCGAACAATCAGTGTTGAAAATAGAGGGTTGTCAGCGAAGCAACCAGCCACGAAAAAA

Fln Alignment:

uma_euler_5354___RILKPLNILAPTATRQPDSLGGLTSLQGLILSDCSHLQRLPDSCGNSANLQRIDFFGCSSLQGLSGSFGNLT---SRYLSTCS*ILHLKSKSLQILSFSL--LRSLKELKRNFCYGLKCLLDSIRMLALSRTI
C0PQE2_______________KYLEKIVLYNGSMTLLPDSVGHLTGLQTLDLIGCSTLQMLPDSVGNLTGLQKLDLSWCSTLQMLPDSVGNLTGLQTLALGWCS--------TLQTLPDSVGNLTGLQTLDLIECSTLQTLPDSVGNLTGLQTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain