SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91252

Length: 384 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91252
CTGTGTATAAATGGAAAGATGGGTTAGCTCCTCTGCCTTCCAGAGAGGCCTTTGTAATTGCAAGAATCCCTGGGGAAACCCATGAAGTTCTTGTAGATCTTTCTTCAGCTTCTGTTACATATGACAAAGTCTATCATGGATTTGGGTACCCCACAATTACATCGGATGAGGATGCAAAGGCTTCTGAGATGGTTTACAACTACCCTCCATTCATACGTTCAATCAAAAGCAGAGGTCTCGAGATCGAACTCGTTGGCTGCGGTGGGTTTTCGGTTGGCTGGTTTGGTGAAAAGAAGCAGGGCAGGAGAACAGTGAAGATCCAGTGCTTCTATCCCAAAGGGACTTCTAATAATTTCGCTCGACCTGTTGAGGGGATCACAGCGG

Ace file of the UniGene sp_v2.0_unigene91252 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Primary amine oxidase (Fragment) n=1 Tax=Vitis vinifera RepID=D7T6W4_VITVI	-	-	2.0e-30	54%
FL-Next	sp=Amine oxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	amine oxidase	-	-	3.36253e-35	65%

Source	InterPros	Term	Type	Identity
Sma3	Copper amine oxidase	IPR000269	-	-
Sma3	Copper amine oxidase, C-terminal	IPR015798	-	-
Sma3	Copper amine oxidase, N2-terminal	IPR015800	-	-
Sma3	Copper amine oxidase, N2/N3-terminal	IPR015801	-	-
Sma3	Copper amine oxidase, N3-terminal	IPR015802	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRF7

Fln msg: Distance to subject end: 480 aas, your sequence is shorter than subject: 127 - 731

Fln protein: VYKWKDGLAPLPSREAFVIARIPGETHEVLVDLSSASVTYDKVYHGFGYPTITSDEDAKASEMVYNYPPFIRSIKSRGLEIELVGCGGFSVGWFGEKKQGRRTVKIQCFYPKGTSNNFARPVEGITA

Protein Length: 128

Fln nts: CTGTGTATAAATGGAAAGATGGGTTAGCTCCTCTGCCTTCCAGAGAGGCCTTTGTAATTGCAAGAATCCCTGGGGAAACCCATGAAGTTCTTGTAGATCTTTCTTCAGCTTCTGTTACATATGACAAAGTCTATCATGGATTTGGGTACCCCACAATTACATCGGATGAGGATGCAAAGGCTTCTGAGATGGTTTACAACTACCCTCCATTCATACGTTCAATCAAAAGCAGAGGTCTCGAGATCGAACTCGTTGGCTGCGGTGGGTTTTCGGTTGGCTGGTTTGGTGAAAAGAAGCAGGGCAGGAGAACAGTGAAGATCCAGTGCTTCTATCCCAAAGGGACTTCTAATAATTTCGCTCGACCTGTTGAGGGGATCACAGCGG

Fln Alignment:

uma_euler_5285___VYKWKDGLAPLPSREAFVIARIPGETHEVLVDLSSASVTYDKVYHGFGYPTITSDEDAKASEMVYNYPPFIRSIKSRGLEIELVGCGGFSVGWFGEKKQGRRTVKIQCFYPKGTSNNFARPVEGIT
C0PRF7_______________VLLWKAGNS-LPSRKASIIAWANGHAYQIIVDLALSQIVENQISHENGYPAMTMEDMTSAIKAPLKSKKFVEIIGKRGVNVSDLACLPISLGWFGPGEEGRRLIKVQCYSSAGTANFYMRPIEGLT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain