SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91225

Length: 412 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene91225
CCGGCCTCACTCTCTCCTGCAACGCCCTCAACCTCAGGCGGGGCGATTGTAATGCACTGGAATAGTGTTGGATTATTGATATCCAAAAGAACAGAAGCAGCGAGAGATATGGAGAAGATGAGGATGGGCCGTGTTGCGGTTGTTCTTCTCTTGATATTTGTCATCACCCTTGAGATGCAGGTGGAGGGCGTTGCAGGAGAGAGTGAGGCCGGAATATGTAAGGCGTATAGCCAAAAGTATAAGGGACACTGCCACGTTGCCAACTGCAAAACCATTTGCATATCTGAAGGATTTAAGGACGGCAGCTGCCACAGCAAGCATCTGCTGTGGCAGAAAAAATGTCGCTGCAGCAAAGCCTGCTGAACAGTGTGTTGCCTTGTCCGCTATTTGCAATAAACATCGCGTGTTTCTT

Ace file of the UniGene sp_v2.0_unigene91225 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Defensin n=1 Tax=Ginkgo biloba RepID=Q670N7_GINBI	-	-	1.0e-08	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	defensin precursor	-	-	3.45993e-11	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	3.45993e-11	55%
Blast2go	defense response to Gram-negative bacterium	GO:0050829	Biological Process	3.45993e-11	55%
Blast2go	extracellular region	GO:0005576	Cellular Component	3.45993e-11	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQX6

Fln msg: No stop codon before M and low homology subject,

Fln protein: MHWNSVGLLISKRTEAARDMEKMRMGRVAVVLLLIFVITLEMQVEGVAGESEAGICKAYSQKYKGHCHVANCKTICISEGFKDGSCHSKHLLWQKKCRCSKAC*

Protein Length: 105

Fln nts: CCGGCCTCACTCTCTCCTGCAACGCCCTCAACCTCAGGCGGGGCGATTGTA_-_ATGCACTGGAATAGTGTTGGATTATTGATATCCAAAAGAACAGAAGCAGCGAGAGATATGGAGAAGATGAGGATGGGCCGTGTTGCGGTTGTTCTTCTCTTGATATTTGTCATCACCCTTGAGATGCAGGTGGAGGGCGTTGCAGGAGAGAGTGAGGCCGGAATATGTAAGGCGTATAGCCAAAAGTATAAGGGACACTGCCACGTTGCCAACTGCAAAACCATTTGCATATCTGAAGGATTTAAGGACGGCAGCTGCCACAGCAAGCATCTGCTGTGGCAGAAAAAATGTCGCTGCAGCAAAGCCTGCTGAACAGTGTGTTGCCTTGTCCGCTATTTGCAATAAACATCGCGTGTTTCTT

Fln Alignment:

uma_euler_4916___AVVLLLIFVITLEMQVEGVAGESEAGICKAYSQKYKGHC-HVANCKTICISEGFKDGSCHSKHLLWQKKCRCSKAC
A9NQX6_______________ALFLLVLLVISIGMMQVEVA---EARMCKTPSSKFKGYCVSSTNCKNVCRTEGFPTGSCDFH--VASRKCYCYKPC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain