SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91159

Length: 575 nt

UniGene Fasta

>sp_v2.0_unigene91159
GCTAAGCAAGCTGGTTTTATTGATACAAGCTTTGACACAATAAGTGGCTCAGGAGCAAATGGGGCAATTATTCACTATCAAGCTCAACCAGATACCTGCAGCATTGTAGATGACAAGAATCTCTTCTTGCTAGACAGTGGTGGTCAATATGTCGATGGGACAACAGACATTACGAGGACTGTACACTTTGGAGAGCCTACTTCACAACATAGGGAATGCTTCACTAGAGTGTTGCAGGGCCATATAGCTCTTGACCAAGCACGATTTCCTGAAAATACTCCTGGTTTCGTGCTCGATGTATTAGCACGCTCCTCACTTTGGAAGATAGGACTGGATTACCGCCATGGTACAGGCCATGGAGTAGGAGCTGCACTGAATGTGCATGAAGGTCCTCAAAGTATCAGTTATCGGTATGAAAATATAACTGGTTTGCAAGGAGGCATGATTGTGAGTAATGAGCCTGGATACTATGAAGATCGATCCTTTGGCATTCGTATTGAGAATCTGCTAGTTGTACGAGAAGTTGAGACTCCAAATCGATTTGGAGGCATCACATATCTTGGATTTGAAAAGCT

Ace file of the UniGene sp_v2.0_unigene91159

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metallopeptidase M24-like protein [Arabidopsis thaliana] gb\|AAL84973.1\| AT3g05350/T12H1_32 [Arabidopsis thaliana] gb\|AAN46861.1\| At3g05350/T12H1_32 [Arabidopsis thaliana] gb\|AEE74224.1\| metallopeptidase M24-like protein [Arabidopsis thaliana]	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	probable xaa-pro aminopeptidase p-like	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Creatinase	IPR000587	-	-
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site	IPR001131	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Rhodopsin, retinal binding site	IPR018229	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ47

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 191 - 738

Fln protein: AKQAGFIDTSFDTISGSGANGAIIHYQAQPDTCSIVDDKNLFLLDSGGQYVDGTTDITRTVHFGEPTSQHRECFTRVLQGHIALDQARFPENTPGFVLDVLARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISYRYENITGLQGGMIVSNEPGYYEDRSFGIRIENLLVVREVETPNRFGGITYLGFEK

Protein Length: 192

Fln nts: GCTAAGCAAGCTGGTTTTATTGATACAAGCTTTGACACAATAAGTGGCTCAGGAGCAAATGGGGCAATTATTCACTATCAAGCTCAACCAGATACCTGCAGCATTGTAGATGACAAGAATCTCTTCTTGCTAGACAGTGGTGGTCAATATGTCGATGGGACAACAGACATTACGAGGACTGTACACTTTGGAGAGCCTACTTCACAACATAGGGAATGCTTCACTAGAGTGTTGCAGGGCCATATAGCTCTTGACCAAGCACGATTTCCTGAAAATACTCCTGGTTTCGTGCTCGATGTATTAGCACGCTCCTCACTTTGGAAGATAGGACTGGATTACCGCCATGGTACAGGCCATGGAGTAGGAGCTGCACTGAATGTGCATGAAGGTCCTCAAAGTATCAGTTATCGGTATGAAAATATAACTGGTTTGCAAGGAGGCATGATTGTGAGTAATGAGCCTGGATACTATGAAGATCGATCCTTTGGCATTCGTATTGAGAATCTGCTAGTTGTACGAGAAGTTGAGACTCCAAATCGATTTGGAGGCATCACATATCTTGGATTTGAAAAGCT

Fln Alignment:

uma_euler_3642___AKQAGFIDTSFDTISGSGANGAIIHYQAQPDTCSIVDDKNLFLLDSGGQYVDGTTDITRTVHFGEPTSQHRECFTRVLQGHIALDQARFPENTPGFVLDVLARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISYRYENITGLQGGMIVSNEPGYYEDRSFGIRIENLLVVREVETPNRFGGITYLGFEK
C0PQ47_______________AKQAGFLDTSFDTISGSGANGAIIHYRAEPDTCNIVDDKNLFLLDSGGQYVDGTTDITRTVHFGEPTSRQRECFTRVLQGHIALDQARFPENTPGFVLDVLARSSLWKIGLDYRHGTGHGVGAALNVHEGPQGISYRYENTTGLQGGMIVSNEPGYYEDRSFGIRIENLLVVREVETPNRFGGITYLGFEK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain