SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene91003

Length: 155 nt

UniGene Fasta

>sp_v2.0_unigene91003
CTCAGCGTAGGCGGGGACAGCATAAACGGGCAGCCCGTGGAGTTCAAGCCATCGTCGGTGTCTTCCTGGGTAAACAACGCTGTCTCCTCACTGTCGAAAATTATCGAAGAATACCATCTTGATGGTATCGACATCGACTACGAGCATTTTCAAGC

Ace file of the UniGene sp_v2.0_unigene91003

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chitinase 1 n=1 Tax=Tulipa bakeri RepID=CHIT1_TULBA	-	-	4.0e-06	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	chitinase 1	-	-	1.63823e-12	89%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	2S globulin	IPR000677	-	-
Sma3	Glycoside hydrolase, family 18, catalytic domain	IPR001223	-	-
Sma3	Glycoside hydrolase, chitinase active site	IPR001579	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NT96

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 51 - 280

Fln protein: LSVGGDSINGQPVEFKPSSVSSWVNNAVSSLSKIIEEYHLDGIDIDYEHFQ

Protein Length: 52

Fln nts: CTCAGCGTAGGCGGGGACAGCATAAACGGGCAGCCCGTGGAGTTCAAGCCATCGTCGGTGTCTTCCTGGGTAAACAACGCTGTCTCCTCACTGTCGAAAATTATCGAAGAATACCATCTTGATGGTATCGACATCGACTACGAGCATTTTCAAGC

Fln Alignment:

uma_euler_1279___LSVGGDSINGQPVEFKPXXXXXXXXXXXXXXXKIIEEYHLDGIDIDYEHFQ
A9NT96_______________LSLGGDSVDSQPAEFKPSSVSSWVDNAVSSLSKIIEEYHLDGIDIDYEHFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain