SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene90936

Length: 568 nt

UniGene Fasta

>sp_v2.0_unigene90936
TTCCTGCCAATTATGGCGCAGAAATTGGGGGAGCGCGAATTCATGGCGGAGCTGTGCAACGGTTTCCGTCTTCTGGCAGATCCCCGGCTGGGACTGATAACCTTGGAGAGCTTGAAGAAGAATTCGGGTATGTTAGGGTTGGATTCCCTGACAGATTCAGAGCTGCGGGCGATGATGCAGGAGGGGAATTTGGACGGCGACGGGGCTCTGAATGAACATGAATTCTGCGTTCTGATGATGAGATTGAGCCCTTCGTTGATGAAATGATTTGGAAGAATTCCCAAATGAGAGATAGTACATGTATTTTTAATTCCGTCAGTGTTGAAAATGAATTGAGGCATTTATGGAGGCGTATGTAACAGATCTGGTTTAGCCATCGGCTTCCAGCCTACAAGGATAAATTTTATCAAGATTGGAGTAGTTTGTGGAGGCGATGAAGAATTAGTTGGTTCCAAAATTTCAAAAAAAATTTAGAAGCCATGTTTGAATTATGTTTTTGATTGTGGAAATGGATTTAACACCATCAAAAATATCTAAAACACTTAAAATTATGAATTTTGACAGTTTT

Ace file of the UniGene sp_v2.0_unigene90936

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ	-	-	7.0e-35	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Blast2go	calcium binding protein with ef-hand motif	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQ27

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 20 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 85 - 115

Fln protein: MAQKLGEREFMAELCNGFRLLADPRLGLITLESLKKNSGMLGLDSLTDSELRAMMQEGNLDGDGALNEHEFCVLMMRLSPSLMK*

Protein Length: 86

Fln nts: TTCCTGCCAATT_-_ATGGCGCAGAAATTGGGGGAGCGCGAATTCATGGCGGAGCTGTGCAACGGTTTCCGTCTTCTGGCAGATCCCCGGCTGGGACTGATAACCTTGGAGAGCTTGAAGAAGAATTCGGGTATGTTAGGGTTGGATTCCCTGACAGATTCAGAGCTGCGGGCGATGATGCAGGAGGGGAATTTGGACGGCGACGGGGCTCTGAATGAACATGAATTCTGCGTTCTGATGATGAGATTGAGCCCTTCGTTGATGAAATGA___TTTGGAAGAATTCCCAAATGAGAGATAGTACATGTATTTTTAATTCCGTCAGTGTTGAAAATGAATTGAGGCATTTATGGAGGCGTATGTAACAGATCTGGTTTAGCCATCGGCTTCCAGCCTACAAGGATAAATTTTATCAAGATTGGAGTAGTTTGTGGAGGCGATGAAGAATTAGTTGGTTCCAAAATTTCAAAAAAAATTTAGAAGCCATGTTTGAATTATGTTTTTGATTGTGGAAATGGATTTAACACCATCAAAAATATCTAAAACACTTAAAATTATGAATTTTGACAGTTTT

Fln Alignment:

uma_euler_430___FLPIMAQKLGEREFMAELCNGFRLLADPRLGLITLESLKKNSGMLGLDSLTDSELRAMMQEGNLDGDGALNEHEFCVLMMRLSPSLM
A9NQ27_______________FLPIMAEKLGERDFMAELCNGFRLLADPRLGLITLESLRRNSGLLGLDSLTDSELRAMMGEGDLDGDGALNEHEFCVLMIRLSPSFM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain