SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene90929

Length: 433 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene90929
TAGTAAGTCATTCAGCCCAACATTCTTCCAAGAGCAAGTTCTTGCCCTTGGGCGCGTTACTGGAAGTCTTAAGAGAAAAGACAGGCGAAGATGAAATGGAGGCAGATAAAATTAATATTGCCCTCTTTCAGACCTTCGGTGATAAGGCCAGCTCCAAAGTTAAGTGGCTTGTGAACATGCACGGCTCTGTCCTGGAGACCAAAAAGGGTGAAAATAAAGGCCACCGCCTAGATGTTCAGGAGGAGCTCCCGCAGCGGCAGCGTATACATGAAGACATGGGTATTCTATTGAGCGGATGCCAAGCTAATGAGACATCTGACGACGCCTGCCCTACCGGTGATCCGCACAAAGCATATGGAGCATTCAGTAACGCTATTCAGACAATTCTTGAACGACATGGAAATCCCATCAGCAACAGGGAATTGGTTTTGGG

Ace file of the UniGene sp_v2.0_unigene90929 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Metacaspase type II n=2 Tax=Picea RepID=Q70VV0_PICAB	-	-	2.0e-23	39%
FL-Next	tr=Metacaspase type II; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	39%
Blast2go	metacaspase type ii	-	-	3.03554e-27	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q70VV0

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 143 - 418

Fln protein: VSHSAQHSSKSKFLPLGALLEVLREKTGEDEMEADKINIALFQTFGDKASSKVKWLVNMHGSVLETKKGENKGHRLDVQEELPQRQRIHEDMGILLSGCQANETSDDACPTGDPHKAYGAFSNAIQTILERHGNPISNRELVL

Protein Length: 144

Fln nts: TAGTAAGTCATTCAGCCCAACATTCTTCCAAGAGCAAGTTCTTGCCCTTGGGCGCGTTACTGGAAGTCTTAAGAGAAAAGACAGGCGAAGATGAAATGGAGGCAGATAAAATTAATATTGCCCTCTTTCAGACCTTCGGTGATAAGGCCAGCTCCAAAGTTAAGTGGCTTGTGAACATGCACGGCTCTGTCCTGGAGACCAAAAAGGGTGAAAATAAAGGCCACCGCCTAGATGTTCAGGAGGAGCTCCCGCAGCGGCAGCGTATACATGAAGACATGGGTATTCTATTGAGCGGATGCCAAGCTAATGAGACATCTGACGACGCCTGCCCTACCGGTGATCCGCACAAAGCATATGGAGCATTCAGTAACGCTATTCAGACAATTCTTGAACGACATGGAAATCCCATCAGCAACAGGGAATTGGTTTTGGG

Fln Alignment:

uma_euler_339___VSHSAQHSSKSKFLPLGALLEVLREKTGEDEMEADKINIALFQTFGDKASSKVKWLVNMHGSVLETKKGENK-------------GHRLD------------VQEELPQRQRIHE--------DMGILLSGCQANETSDDACPTGDPHKAYGAFSNAIQTILERHGNPISNRELVL
Q70VV0_______________IEYHGKGRAKNRSLPLSTLIEILNEKTGRHDIDVGKIRPTLFDMFGDDASPKVKKFVKVLVTKLQSSGNEGGLLGAIGNLAQQFLKQKLDGSDGGSEYVKPALQEEVSSTQEIYAGSGKRGLPDMGILVSGCQSDQTSADANPTGNPAHAYGALSNAIQTILAEHDGPIPNRQLVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain