SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene90926

Length: 381 nt

UniGene Fasta

>sp_v2.0_unigene90926
ACGCGATCGTCGAGTCAGGGATCATCGGGGATCGTCTCGTGTGGAAGGCGTATTCAACGTTGAGCAGCCACCGCAACTCATAGTGCTCCGTTGCTATGACTGTCCGGACTCCTCCCTTGCTCCAAATATTTCAACAAAGAATTTAAAAGTTTTACATATAGAGGGAAGCAATCTGGAAACACTGTGGCATCTTGAATCCCAGGCACCTCGGAAGCTGAGGGAGTTGTACATCGCTGGTTCTAGGCTACCAAAGATTCCACAGTCCATAGGGCAGCTGCGGCGCCTCGAGAAGGTTGTCCTCCGGAGTGAGGAGGATATAGTGTCGTTCGAGACTTTGCCCGATGAATTCGGCCAGCTGCAGTCTTTGAAACACTTGGAATT

Ace file of the UniGene sp_v2.0_unigene90926

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	8.0e-17	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	leucine-rich repeat containing protein	-	-	8.08063e-20	57%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMZ7

Fln msg: Distance to subject end: 401 aas, your sequence is shorter than subject: 126 - 618

Fln protein: RDRRVRDHRGSSRVEGVFNVEQPPQLIVLRCYDCPDSSLAPNISTKNLKVLHIEGSNLETLWHLESQAPRKLRELYIAGSRLPKIPQSIGQLRRLEKVVLRSEEDIVSFETLPDEFGQLQSLKHLE

Protein Length: 127

Fln nts: ACGCGATCGTCGAGTCAGGGATCATCGGGGATCGTCTCGTGTGGAAGGCGTATTCAACGTTGAGCAGCCACCGCAACTCATAGTGCTCCGTTGCTATGACTGTCCGGACTCCTCCCTTGCTCCAAATATTTCAACAAAGAATTTAAAAGTTTTACATATAGAGGGAAGCAATCTGGAAACACTGTGGCATCTTGAATCCCAGGCACCTCGGAAGCTGAGGGAGTTGTACATCGCTGGTTCTAGGCTACCAAAGATTCCACAGTCCATAGGGCAGCTGCGGCGCCTCGAGAAGGTTGTCCTCCGGAGTGAGGAGGATATAGTGTCGTTCGAGACTTTGCCCGATGAATTCGGCCAGCTGCAGTCTTTGAAACACTTGGAATT

Fln Alignment:

uma_euler_292___VEGVFNVEQPPQLIVLRCYDCPDSSLAPNISTKNLKVLHIEGSNLETLWHLESQAPRKLRELYIAGSRLPKIPQSIGQLRRLEKVVLRSEEDIVSFETLPDEFGQLQSLKHL
B8LMZ7_______________LESILRRVESPNLIWLRWNNCPYSCLPSWIPMKNIRVLEVVGTKLKKLWRAESQAPLELRELNVY-APLSMFPKSIGQMKHIEKIVVTCMPDLIHLKSLPEEFCQLSSLKYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain