SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene90533

Length: 486 nt

UniGene Fasta

>sp_v2.0_unigene90533
AAAATGTCAAGCAAGTTTGCGAAAACTGTGGTGTTAAAATGGGGGATTATTTCTGTTCAACGTGCAAGTTCTTTGATGATGATATCTCAAAGCAACAATATCATTGTGATGATTGTGGCATATGCAGAGTAGGAGGCCGGGATAATTTTTTCCATTGCCAGAAATGTGGTATGTTTCCTAAATACTCATGCCAGAAATGTGGTATAAGGGTTAGGATTCTGAAGCCCTCTTAAACATCCCTTACTTCTGTAAAGATCAATTTTTAAATAACTATGTATTGGTCTCAGATTTTTGTGGCGGCTTCCTGTTCTCGACAATCATCTTAATTTTTGACATGGGTGTAGTTTTTTAGGAGTTTCAAGAAAATTGAGATTAGAGTAAATAGAACATTTCACAATGAAAGGGTTTTTGTTGCTACTGATTTGTTTCCATTGTTTCTGGGGTATCAAGTAATCTAAAATTTCTTCTTGTCTGATAATTTATTTT

Ace file of the UniGene sp_v2.0_unigene90533

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ring finger and CHY zinc finger domain-containing protein 1 n=4 Tax=Arabidopsis RepID=F4IZL5_ARATH	-	-	4.0e-24	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	2.29222e-34	79%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CHY-type	IPR008913	-	-
Sma3	Zinc finger, CTCHY-type	IPR017921	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9X0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 29 aas, your sequence is shorter than subject: 77 - 273

Fln protein: NVKQVCENCGVKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGRDNFFHCQKCGMFPKYSCQKCGIRVRILKPS*

Protein Length: 78

Fln nts: AAAATGTCAAGCAAGTTTGCGAAAACTGTGGTGTTAAAATGGGGGATTATTTCTGTTCAACGTGCAAGTTCTTTGATGATGATATCTCAAAGCAACAATATCATTGTGATGATTGTGGCATATGCAGAGTAGGAGGCCGGGATAATTTTTTCCATTGCCAGAAATGTGGTATGTTTCCTAAATACTCATGCCAGAAATGTGGTATAAGGGTTAGGATTCTGAAGCCCTCTTAAACATCCCTTACTTCTGTAAAGATCAATTTTTAAATAACTATGTATTGGTCTCAGATTTTTGTGGCGGCTTCCTGTTCTCGACAATCATCTTAATTTTTGACATGGGTGTAGTTTTTTAGGAGTTTCAAGAAAATTGAGATTAGAGTAAATAGAACATTTCACAATGAAAGGGTTTTTGTTGCTACTGATTTGTTTCCATTGTTTCTGGGGTATCAAGTAATCTAAAATTTCTTCTTGTCTGATAATTTATTTT

Fln Alignment:

uagpf_euler_28405___NVKQVCENCGVKMGDYFCSTCKFFDDDISKQQYHCDDCGICRVGGRDNFFHCQKCGMFPKYSCQK
D5A9X0_______________NVNQVCENCGVKMGEYFCSKCKFFDDDISKKQYHCDDCGICRVGGRDNFFHCQKCGCCYTVGLQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain