SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene90331

Length: 269 nt

UniGene Fasta

>sp_v2.0_unigene90331
TCGTGACCTTGGCTGTCACTCAGTAAGTCTCTATTCACGGTATTTATTCATCATTTGTGTTTCGTCATCATTTCGGCTGTTGTAACTTTTTCTTCTTCCGCAGAAGCAAAAGCAAGGGTTGGCGTTACAGTTGAATCTCCGTCGTCGACAAGTTGAAGTGTGGTTCCAGAATAGACGAGCAAGGACGCAGCTGAAGCAAATCGAAGTAGACTGTGAGGTTATGAAGAGATATAATGAGGCACTTGCAGACGAGAACAGAAAACTTCACA

Ace file of the UniGene sp_v2.0_unigene90331

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Homeobox-leucine zipper protein HOX1 n=3 Tax=Oryza sativa RepID=HOX1_ORYSJ	-	-	1.0e-15	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	homeobox-leucine zipper protein hox27	-	-	2.7665e-20	82%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NKN4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 61 aas, your sequence is shorter than subject: 89 - 309

Fln protein: RDLGCHSVSLYSRYLFIICVSSSFRLL*LFLLPQKQKQGLALQLNLRRRQVEVWFQNRRARTQLKQIEVDCEVMKRYNEALADENRKLH

Protein Length: 90

Fln nts: TCGTGACCTTGGCTGTCACTCAGTAAGTCTCTATTCACGGTATTTATTCATCATTTGTGTTTCGTCATCATTTCGGCTGTTGTAACTTTTTCTTCTTCCGCAGAAGCAAAAGCAAGGGTTGGCGTTACAGTTGAATCTCCGTCGTCGACAAGTTGAAGTGTGGTTCCAGAATAGACGAGCAAGGACGCAGCTGAAGCAAATCGAAGTAGACTGTGAGGTTATGAAGAGATATAATGAGGCACTTGCAGACGAGAACAGAAAACTTCACA

Fln Alignment:

uagpf_euler_24614___KQKQGLALQLNLRRRQVEVWFQNRRARTQLKQIEVDCEVMKRYNEALADENRKL
A9NKN4_______________KQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain