SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene89584

Length: 471 nt

UniGene Fasta

>sp_v2.0_unigene89584
GTCGTGACCTTGGCTGTCACTCAGGCGGCCTGAAGCATATAGTGGTCTTCAACATCTTCTTGTGGAGAGCATCGGTCGGTCATCGAAGCGGATTACAAAAATGACTAGTCGCACTCTCTCCGGAAATTCTTACTACGGCAAATACGCTGAGGAGTTGATTGAGACTGCCAATTACATTGCAACACCTGGCAAAGGTATCCTTGCAGCGGATGAGAGTACAGGAACCATTGGGAAGCGCCTGTCGAGCATCAACGTGGAGAATGTAGAGGCCAATCGTAGGGCGCTTCGAGAATTGCTCTTTACAACTCCTGGTGCTCTGCAGTATTTGAGTGGAGTTATTTTCTTTGAAGAAACTCTTTACCAGAGCACAACTAGTGGAAAACTTTTTGTCCAGGTCCTTCAGGAAGCAGGAGTGGTGCCCGGTATCAAAGTGGACAAGGGAACAGTAGATTTGGCTGGTACAATGGGGAA

Ace file of the UniGene sp_v2.0_unigene89584

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Fructose-bisphosphate aldolase n=2 Tax=Picea sitchensis RepID=A9NP14_PICSI	-	-	91%
FL-Next	sp=Fructose-bisphosphate aldolase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	fructose-bisphosphate aldolase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	pentose-phosphate shunt	GO:0006098	Biological Process	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Vesicle transport protein, SFT2-like	IPR011691	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSH4

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 123 - 364

Fln protein: MTSRTLSGNSYYGKYAEELIETANYIATPGKGILAADESTGTIGKRLSSINVENVEANRRALRELLFTTPGALQYLSGVIFFEETLYQSTTSGKLFVQVLQEAGVVPGIKVDKGTVDLAGTMG

Protein Length: 124

Fln nts: GTCGTGACCTTGGCTGTCACTCAGGCGGCCTGAAGCATATAGTGGTCTTCAACATCTTCTTGTGGAGAGCATCGGTCGGTCATCGAAGCGGATTACAAAA_-_ATGACTAGTCGCACTCTCTCCGGAAATTCTTACTACGGCAAATACGCTGAGGAGTTGATTGAGACTGCCAATTACATTGCAACACCTGGCAAAGGTATCCTTGCAGCGGATGAGAGTACAGGAACCATTGGGAAGCGCCTGTCGAGCATCAACGTGGAGAATGTAGAGGCCAATCGTAGGGCGCTTCGAGAATTGCTCTTTACAACTCCTGGTGCTCTGCAGTATTTGAGTGGAGTTATTTTCTTTGAAGAAACTCTTTACCAGAGCACAACTAGTGGAAAACTTTTTGTCCAGGTCCTTCAGGAAGCAGGAGTGGTGCCCGGTATCAAAGTGGACAAGGGAACAGTAGATTTGGCTGGTACAATGGGGAA

Fln Alignment:

uagpf_euler_18852___MTSRTLSGNSYYGKYAEELIETANYIATPGKGILAADESTGTIGKRLSSINVENVEANRRALRELLFTTPGALQYLSGVIFFEETLYQSTTSGKLFVQVLQEAGVVPGIKVDKGTVDLAGTMG
A9NSH4_______________MTGRTLSGNSYYGKYSEELIATANYIATPGKGILAADESTGTIGKRLSSINVENVEVNRRSLRELLFTTPGALQYLSGVIFFEETLYQSTASGKPFVEVLQEAGVVPGIKVDKGTVDLAATNG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain