SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene89575

Length: 1422 nt

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene89575

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative ankyrin-repeat protein [Vitis aestivalis]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	ankyrin repeat domain	-	-	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ankyrin repeat	IPR002110	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRF1

Fln msg:

Fln protein: MASAEEKSSASGSKGAKTATSSSQPKTPTSSGRTVASAEPEMGIPPNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQHSVKSSGQQSIPQLDGEQYFSAMQQVMQNPQFMAMAEQLGNALMQDPNMSSMLQTLADPSHKEQVEGRLAKVRQDPSLKPILDEIESGGPAAMMKYWNDPAVLTKLGQAMGVGPVADAATSDQPSGAEQGEEDDGCVEEDELTVHHTASVGDVEGLRNLLKLGADKDEKDAEGRTALHFACGYGEVKCAEVLLEAGVVVDALDKNKNTALHYAAGYGREECVGLLLKYGAAVTLQNLDGKTPIDVAKLNEQKEVLKLLEKDAFL*

Protein Length: 350

Fln nts: GTCCTTGAACAACAGAGGAAAAAGAGGGCACCTGTGATCTATCGTTCCCTGCAAATCTGCGGAGGATTTAGTGTATTTTGCTGCAGCC_-_ATGGCCTCCGCAGAGGAAAAGTCAAGTGCATCTGGCAGTAAGGGAGCTAAGACAGCAACATCATCATCTCAACCAAAAACTCCTACTAGCAGTGGACGTACAGTGGCTTCCGCTGAGCCAGAGATGGGGATACCACCAAACCCATTTGATTTCTCTGCAATGTCTGGCTTACTTAATGATCCCAGCATAAAAGAATTAGCAGAGCAGATAGCCAAGGATCCATCATTCAATCAGATGGCAGAGCAATTACAACACAGTGTGAAAAGTTCAGGGCAACAAAGTATCCCACAGCTAGATGGTGAGCAGTATTTTTCTGCAATGCAACAGGTTATGCAAAATCCTCAGTTCATGGCCATGGCTGAGCAACTTGGTAATGCTCTAATGCAGGATCCAAACATGTCCAGCATGCTACAAACTCTTGCAGATCCTTCCCATAAGGAGCAGGTGGAGGGGCGTTTGGCAAAAGTTCGACAAGATCCAAGTTTGAAGCCTATCCTTGATGAGATTGAATCAGGGGGTCCAGCTGCAATGATGAAATACTGGAATGATCCAGCTGTTCTGACAAAATTAGGTCAAGCTATGGGAGTTGGTCCTGTGGCTGATGCTGCTACTTCAGATCAGCCATCTGGGGCAGAACAGGGTGAAGAGGATGATGGTTGTGTGGAAGAGGATGAGCTTACTGTTCATCACACTGCGAGTGTTGGTGATGTTGAGGGGCTGAGGAACCTTCTGAAACTTGGTGCAGATAAAGATGAGAAGGATGCCGAGGGTCGAACTGCTTTGCACTTTGCATGTGGTTATGGTGAGGTGAAATGTGCTGAAGTACTTCTCGAAGCAGGAGTGGTGGTTGATGCACTGGACAAGAACAAGAACACAGCCCTCCATTATGCAGCTGGCTATGGACGTGAGGAGTGTGTAGGACTATTGTTAAAATATGGTGCTGCTGTGACTCTGCAAAACTTGGATGGAAAAACGCCCATAGATGTTGCCAAACTAAATGAGCAGAAGGAGGTGTTGAAGCTGCTGGAGAAGGATGCATTCTTGTAG___GCTGACTATGTTGGGCTTTCGAGTTTTCAACATCATGATGATAATTTAGGTTACCTTTAAGTAGCATTTATAGAAAACTATTAGCATTAGTCTGGTTGAAAATTCGTTTTGTACAAACTGTATATGTGCATGGAGACAAAATAACGTGTCTAAAAAATCCAGATATTTTATTGTAGATATTCATTTGTGATTCTGTGAATGAAGCTTCAATCTTGAGTTTCTGGAGATATCATTTCATTTACCTTATTGTTTCACATAAAAAGTGCGGAGATATATTATGTATTCCT

Fln Alignment:

uagpf_euler_18736___GRTVASAEPEMGIPPNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMAEQLQHSVKSSGQQSIPQLDGEQYFSAMQQVMQNPQFMAMAEQLGNALMQDPNMSSMLQTLADPSHKEQVEGRLAKVRQDPSLKPILDEIESGGPAAMMKYWNDPAVLTKLGQAMGVGPVADAATSDQPSGAXXXXXXXXXXXXXXLTVHHTASVGDVEGLRNLLKLGADKDEKDAEGRTALHFACGYGEVKCAEVLLEAGVVVDALDKNKNTALHYAAGYGREECVGLLLKYGAAVTLQNLDGKTPIDVAKLNEQKEVLKLLEKDAFL
A9NRF1_______________GERRAASNPGTGAP-NPFDFSAMSSLLNDPSIKELAKQIAKDPSFNQMAEQLQRNVQSSGQQSIPELDGEQYFSAMQQVMQNPQFMSMAEQLGNALMQDPSMSNMLQTLADPSHKDQVEGRLAQVREDPSLKPILDEIESGGPAAMMKYWNDPTVLTKLGQAMGVGPLADAATSDEPSGADQGEEDDANEEEDELTVHHTASVGDVEGLRNLLKLGADKDEKDTEGRTALHFACGYGEVKCAEVLLEAGVMVDALDKNKNTALHYAAGYGREECVGLLLKYGAAVTLQNLDGKTPIEVAKLNEQKEVLKLLEKDAFL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain