SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene89502

Length: 415 nt

UniGene Fasta

>sp_v2.0_unigene89502
CGTGACCTTGGCTGTCACTCAAGAGTCTAGCGTTGTATCCCATTACAGTAAGGCCGGTTGAACTTCAGCGTCGTCCCCTTCCTTCTCTAGCAGAGGTTGTCGTAGTCACAATGTCGATGTCGAAGAGTTCGAAGATGCTGCAATACATAAACTACAGAATGCGGGTGACGATCCAGGACGGACGCCACCTGATTGGAAAATTCATGGCATTCGATCGCCACATGAATTTGGTGTTGGGGGATTGTGAAGAGTTCAGAAGACTTCCTCCCAAGAAGGGAGCCGCAGCAGACAAGAAAGAAGAGCGAGAGGATAGACGAACCCTCGGCCTCGTCCTCCTCAGAGGGGAAGAAGTGGTTACCATGACAGTCGAAGGTCCGCCCCCGCCCGATGAATCGCGAGTCAAGACTGCCGCAGC

Ace file of the UniGene sp_v2.0_unigene89502

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref\|NP_849414.1\| small nuclear ribonucleoprotein associated protein B [Arabidopsis thaliana] ref\|NP_001031682.1\| small nuclear ribonucleoprotein associated protein B [Arabidopsis	-	-	2.0e-26	65%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	81%
Blast2go	protein	-	-	2.35984e-33	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	positive regulation of cell fate commitment	GO:0010455	Biological Process	2.35984e-33	89%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	2.35984e-33	89%
Blast2go	secondary cell wall biogenesis	GO:0009834	Biological Process	2.35984e-33	89%
Blast2go	root cap development	GO:0048829	Biological Process	2.35984e-33	89%
Blast2go	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	2.35984e-33	89%
Blast2go	Cajal body	GO:0015030	Cellular Component	2.35984e-33	89%
Blast2go	nucleolus	GO:0005730	Cellular Component	2.35984e-33	89%

Source	InterPros	Term	Type	Identity
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	Small ribonucleoprotein associated, SmB/SmN	IPR017131	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9I0V8

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 101 - 250

Fln protein: MSMSKSSKMLQYINYRMRVTIQDGRHLIGKFMAFDRHMNLVLGDCEEFRRLPPKKGAAADKKEEREDRRTLGLVLLRGEEVVTMTVEGPPPPDESRVKTAA

Protein Length: 102

Fln nts: CGTGACCTTGGCTGTCACTCAAGAGTCTAGCGTTGTATCCCATTACAGTAAGGCCGGTTGAACTTCAGCGTCGTCCCCTTCCTTCTCTAGCAGAGGTTGTCGTAGTCACA_-_ATGTCGATGTCGAAGAGTTCGAAGATGCTGCAATACATAAACTACAGAATGCGGGTGACGATCCAGGACGGACGCCACCTGATTGGAAAATTCATGGCATTCGATCGCCACATGAATTTGGTGTTGGGGGATTGTGAAGAGTTCAGAAGACTTCCTCCCAAGAAGGGAGCCGCAGCAGACAAGAAAGAAGAGCGAGAGGATAGACGAACCCTCGGCCTCGTCCTCCTCAGAGGGGAAGAAGTGGTTACCATGACAGTCGAAGGTCCGCCCCCGCCCGATGAATCGCGAGTCAAGACTGCCGCAGC

Fln Alignment:

uagpf_euler_17942___LQYINYRMRVTIQDGRHLIGKFMAFDRHMNLVLGDCEEFRRLPPKKGAAADKKEEREDXXXXXXXXXXXXXXXXMTVEGPPPPDESRVKTAA
B9I0V8_______________LQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKG--KKNNEEREDRRTLGLVLLRGEEVISMTVEGPPPPEESRAKAVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain