SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene88992

Length: 575 nt

UniGene Fasta

>sp_v2.0_unigene88992
GAGGAGTTTATGATGGATTCTGAGGCGCACGGGAGGCTTCTGAGGAGGATCCATTACTACATCGGCTACGGAGCATTGGCTGCTGATCGCGTTCTATGCCGGCCTCGGTCTGGGAGGCCTTATTACACTCGGAATTGTTACGGCGCAACAGGTCCTGTCAGGCCTTACCACAGGAGTTGCACAGCTATCACTCGGTGCAGGCGTTACACTAGCTAGGCTTCCATTTGGTTCCTCGTTTTCCTCCTTTCTTGAACCCTACATTTACTTGACCAGGGGTCGTATGTTTTGATTTCTTTAAAATAACCGTAAGTTTTGTTATGTATTCATCTGTAATAGCCTAATATTTTTTCCAATAAGAATGAGTATCTTCGGGTTGATAAATGTCCATTTTTACTGAAATATCATGAGTGAATCCGAAATGCATGTGATATGCTCTAGTCCTTCCTGATCAGTGCCTTAAATCATCATATACAGTTTGTATCAGTAATTAGGAAACTGAACACGGGATGTTGCTGAACCAAATCAAGAATTTGTTTGCAATGAATTAGATGTACGGTGTCTGCATATTGAGAACT

Ace file of the UniGene sp_v2.0_unigene88992

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rapid alkalinization factor 3 n=1 Tax=Solanum chacoense RepID=Q6TF27_SOLCH	-	-	2.0e-16	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	protein	-	-	5.05277e-40	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	signal transduction	GO:0007165	Biological Process	5.05277e-40	72%
Blast2go	signal transducer activity	GO:0004871	Molecular Function	5.05277e-40	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Rapid ALkalinization Factor	IPR008801	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTU3

Fln msg: your sequence is shorter than subject: 72 - 139

Fln protein: EEFMMDSEAHGRLLRRIHYYIGYGALAADRVLCRPRSGRPYYTRNCYGATGPVRPYHRSCTAITRCRRYTS*

Protein Length: 73

Fln nts: GAGGAGTTTATGATGGATTCTGAGGCGCACGGGAGGCTTCTGAGGAGGATCCATTACTACATCGGCTACGGAGCATTGGCTGCTGATCGCGTTCTATGCCGGCCTCGGTCTGGGAGGCCTTATTACACTCGGAATTGTTACGGCGCAACAGGTCCTGTCAGGCCTTACCACAGGAGTTGCACAGCTATCACTCGGTGCAGGCGTTACACTAGCTAG___GCTTCCATTTGGTTCCTCGTTTTCCTCCTTTCTTGAACCCTACATTTACTTGACCAGGGGTCGTATGTTTTGATTTCTTTAAAATAACCGTAAGTTTTGTTATGTATTCATCTGTAATAGCCTAATATTTTTTCCAATAAGAATGAGTATCTTCGGGTTGATAAATGTCCATTTTTACTGAAATATCATGAGTGAATCCGAAATGCATGTGATATGCTCTAGTCCTTCCTGATCAGTGCCTTAAATCATCATATACAGTTTGTATCAGTAATTAGGAAACTGAACACGGGATGTTGCTGAACCAAATCAAGAATTTGTTTGCAATGAATTAGATGTACGGTGTCTGCATATTGAGAACT

Fln Alignment:

uagpf_euler_14136___EEFMMDSEAHGRLLRRIHYYIGYGALAADRVLCRPRSGRPYYTRNCYGATGPVRPYHRSCTAITRCRRYTS
A9NTU3_______________EEFMMDSEAHGRLLRRVRYYISYGALAANRVPCRPRSGRSYYTRNCYAATGPVRPYHRSCTAITRCKRYTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain