SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene88814

Length: 344 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene88814
GTCGTGACCTTGGCTGTCACTCTGCCATTAAGTTCATCTCCAAGATTGTTGCACGATAGATTATTGTAAGGGATGTCAACCGTTACCATCATCTCAAGGATGTACAATGCTCTTGTGGTGATTATTGGTAATTTGAAGTGAATAAAGCTATTGGCATAAACCTTACATAATGACAGCTTTAAAGACAAGGTGTTGCAATTCAAGCAATTGGGTAGTATATTTTATTTATGGTGAATATTCCAGTCATCGGCCAATGGATACATTGATGGGGTTAAACATCTTAGCCAGTTGTCATAAACCTTGCATAATGACGGTTTTAAAGACAAGGTGTTGCAATTCAAGCA

Ace file of the UniGene sp_v2.0_unigene88814 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	pentatricopeptide repeat-containing protein at2g27610-like	-	-	8.03322e-13	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 43 - 246

Fln protein: RDLGCHSAIKFISKIVAR*IIVRDVNRYHHLKDVQCSCGDYW*

Protein Length: 44

Fln nts: GTCGTGACCTTGGCTGTCACTCTGCCATTAAGTTCATCTCCAAGATTGTTGCACGATAGATTATTGTAAGGGATGTCAACCGTTACCATCATCTCAAGGATGTACAATGCTCTTGTGGTGATTATTGGTAA___TTTGAAGTGAATAAAGCTATTGGCATAAACCTTACATAATGACAGCTTTAAAGACAAGGTGTTGCAATTCAAGCAATTGGGTAGTATATTTTATTTATGGTGAATATTCCAGTCATCGGCCAATGGATACATTGATGGGGTTAAACATCTTAGCCAGTTGTCATAAACCTTGCATAATGACGGTTTTAAAGACAAGGTGTTGCAATTCAAGCA

Fln Alignment:

uagpf_euler_12439___CHSAIKFISKIVAR*IIVRDVNRYHHLKDVQCSCGDYW
D5AAE0_______________CHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain