SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene87856

Length: 1325 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene87856 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SCX9_PHYPA	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	sucrose phosphate synthase	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Sucrose-phosphate synthase	IPR006380	-	-
Sma3		IPR012287	-	-
Sma3	Sucrose phosphate synthase, plant	IPR012819	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLM0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 47 aas, your sequence is shorter than subject: 387 - 713

Fln protein: FINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIQRTLNNGLLVDPHDDKEIAAALYRLVVDKNLWAECRQNGLQNIHLYSWPQHCKIYLSRISQCRMRHPQWQSENDQNENMDSESDSGSFKDAPDTSLRLSLDADRPSRSSSLNSPFDLDKLRENEENVGGISEHIRMIIGKTKDNQSKLRETNDVNSQEKRSVEHSNSLGSSGKQLLRRRKRLFVIAVDCYDASGEPLLSRQAIIIQEIMNAVCFAGNFSSPGFILSTALTVPETISMLQSIGIKVSAFDALICSSGSQLLYTAGDNPDSPIYPDPDYDSHIDYRWGAEGLRKSMKKLRGPENSRFLVEDAEASNFHCLAYQVKNISTVSFNSRYQVKNISTVSFNSRYHFQ*

Protein Length: 388

Fln nts: TTTTTATCAATCCGGCCCTGGTGGAACCCTTTGGTTTGACTCTCATTGAGGCCGCTGCACATGGATTACCTATGGTTGCAACAAAGAATGGAGGACCTGTAGATATTCAGCGGACGTTGAATAATGGTTTGTTGGTAGATCCCCATGACGACAAGGAAATTGCAGCTGCTTTGTACAGACTAGTAGTTGATAAGAACCTCTGGGCTGAATGCAGGCAAAATGGTCTGCAGAACATTCATCTCTATTCTTGGCCACAGCATTGCAAAATATATTTGTCAAGGATCTCCCAATGCAGAATGAGACACCCACAATGGCAGAGTGAAAATGACCAAAATGAAAATATGGATTCCGAATCAGACAGTGGTTCATTCAAGGATGCCCCTGATACATCCCTTCGTCTCTCATTAGATGCAGATAGGCCTTCTCGCTCTAGTTCACTTAATAGCCCCTTTGATCTTGATAAACTTCGTGAAAATGAAGAGAACGTCGGAGGTATTTCTGAACACATTAGGATGATCATAGGAAAGACTAAGGATAATCAATCTAAATTGCGGGAGACAAATGACGTGAATTCACAGGAAAAACGAAGTGTAGAGCACAGTAATAGCTTAGGTTCTTCAGGGAAACAACTTCTCAGGAGAAGAAAGCGTCTATTTGTGATTGCAGTGGATTGCTATGATGCTTCTGGAGAGCCCCTTCTTAGTAGACAAGCTATTATCATCCAAGAGATTATGAATGCAGTTTGTTTTGCTGGCAACTTTTCATCTCCTGGATTCATTTTATCTACTGCATTAACAGTTCCAGAAACAATTTCCATGCTTCAGTCTATCGGAATCAAAGTATCTGCGTTTGATGCTCTAATTTGCAGCAGTGGGAGCCAACTTTTATATACAGCTGGTGACAATCCAGATTCACCCATATATCCAGATCCAGACTATGATTCTCATATTGATTATCGCTGGGGTGCAGAAGGTCTCAGAAAAAGCATGAAAAAATTGAGAGGCCCAGAGAATTCTCGGTTCCTAGTGGAAGATGCTGAAGCATCTAACTTCCATTGCTTGGCATATCAAGTCAAGAACATATCCACTGTAAGTTTCAATTCTAGATATCAAGTCAAGAACATATCCACTGTTAGTTTCAATTCTAGATATCATTTTCAGTGACTGGTATATGTTCTATGAGTGGGATTCAGCGTCCTGAAAAACCAGAAAAACATTGGTTTTTTATTTAGGCACCTCTTTACTGGTTCCAATTGCATGACATTAAGATCCCGTTCTAAACAATTAGAATGAAGTACAAGAACTAGCTTTATTTATGCTAGTTAA

Fln Alignment:

uagpf_euler_7147___FINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIQRTLNNGLLVDPHDDKEIAAALYRLVVDKNLWAECRQNGLQNIHLYSWPQHCKIYLSRISQCRMRHPQWQSENDQNENMDSESDSGSFKDAPDTSLRLSLDADRPSRSSSLNSPFDLDKLRENEENVGGISEHIRMIIGKTK--DNQSKLRETNDVNSQEKRSVEHSNSLGSSGKQLLRRRKRLFVIAVDCYDASGEPLLSRQAIIIQEIMNAV---CFAGNFSSPGFILSTALTVPETISMLQSIGIKVSAFDALICSSGSQLLYTA-----GXXXXXXXXXXXXXXXXXXYRWGAEGLRKSMKKLRGPE------NSRFLVEDAEASNFHCLAYQVKN
B8LLM0_______________FINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDIHTTLNNGLLVDPHDQKAIANALLELVADKNLWNECRRNGLRNIHLFSWPEHCRKYLSRVALCRMRHPQWQTDTLMDTTMEEESMGDSLKDVQDMSLRLSVDGDKYSVYGSLDNSAEVDKLLAAKGD-PELYNQVKRVLDKLKRAPPSSTTEETEPKPDVNEPRAPANNVIASNKYPALRKKRKLFVIAVDCYDDNGN-VSPRMLEIIQEIFKAVRSDATAARFA--GLVLSTALTVDETLGMLNSGNVQPHEFDALICSSGSELYYPAIPAYPDDGSDKKLWPDPDYDSHIDYRWGGEGLRKTVHILTAPERDGQEKQERVIFENAEHSNAHCLAYVVKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain