SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86520

Length: 357 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86520
GAGATGGGCTTCATGCTCCGGAATATTCTCAGTCACTCGCAGCGCGGAGAGACGGTGAATGTGCCGGACCTCCTGAACATCTGCGCCGCCAACATGATCGGGCAGATCATTCTTAGCAAGCGGGTGTTCGAGACAGAAGGGGACGAGGCCAACGAGTTCAAGGACATGGTGGTGGAACTCATGACCTCCGCTGGATACTTCAATATCGGAGACTTCATTCCATCGCTAGCGTGGATGGACTTGCAGGGCATTCAATGGGACGCACTTATACAGAGGATGATCGAGGAACACCAGTCCACGGCCAGCGTCTAAGCCCGATTTCCTAGACATTGTGATGTCTCAGAGAGACAACTGCGA

Ace file of the UniGene sp_v2.0_unigene86520 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Flavonoid 3',5'-hydroxylase n=2 Tax=Cyclamen RepID=D0EUZ8_9ERIC	-	-	1.0e-34	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	flavonoid 3 -hydroxylase	-	-	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN92

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 224 aas, your sequence is shorter than subject: 104 - 452

Fln protein: EMGFMLRNILSHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQWDALIQRMIEEHQSTASV*

Protein Length: 105

Fln nts: GAGATGGGCTTCATGCTCCGGAATATTCTCAGTCACTCGCAGCGCGGAGAGACGGTGAATGTGCCGGACCTCCTGAACATCTGCGCCGCCAACATGATCGGGCAGATCATTCTTAGCAAGCGGGTGTTCGAGACAGAAGGGGACGAGGCCAACGAGTTCAAGGACATGGTGGTGGAACTCATGACCTCCGCTGGATACTTCAATATCGGAGACTTCATTCCATCGCTAGCGTGGATGGACTTGCAGGGCATTCAATGGGACGCACTTATACAGAGGATGATCGAGGAACACCAGTCCACGGCCAGCGTCTAAGCCCGATTTCCTAGACATTGTGATGTCTCAGAGAGACAACTGCGA

Fln Alignment:

mc_euler_9602___EMGFMLRNILSHSQRGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQ---------WDALIQRMIEEHQSTASV*ARFPRHCDV
B8LN92_______________EMGFMLRNILKHSQQGETVNVPDLLNICAANMIGQIILSKRVFETEGDEANEFKDMVVELMTSAGYFNIGDFIPSLAWMDLQGIQRGMKKLHKRWDALIARMIEEHQSTAKQRASRPDFLDI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain