SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86500

Length: 251 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86500
AACATCCAGAAGGAATCCACCCTGCATCTTGTCCTACGTCTGAGAGGTGGGATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCTCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCT

Ace file of the UniGene sp_v2.0_unigene86500 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin 4 UBQ4 n=1 Tax=Arabidopsis thaliana RepID=Q0WRN6_ARATH	-	-	4.0e-39	100%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	100%
Blast2go	ubiquitin-like protein	-	-	0.0	100%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular protein metabolic process	GO:0044267	Biological Process	0.0	100%
Blast2go	intracellular	GO:0005622	Cellular Component	0.0	100%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 83 - 229

Fln protein: NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST

Protein Length: 84

Fln nts: AACATCCAGAAGGAATCCACCCTGCATCTTGTCCTACGTCTGAGAGGTGGGATGCAGATCTTCGTCAAAACCCTCACCGGTAAGACAATCACTTTGGAGGTTGAGAGCTCAGACACCATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATACCTCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCT

Fln Alignment:

mc_euler_7974___NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST
Q7FPA4_______________NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain