SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86419

Length: 1129 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene86419 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-binding protein [Medicago truncatula]	-	-	2.0e-31	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	protein	-	-	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN64

Fln msg:

Fln protein: MADTYWNRFAAERDGRSAALASAAKRPRNEYDLLTSGSRDGPGYLPREDPRLDDRSRRLLRETDPLGPAYDRYVRNGLSSYGSSGLNAGDLGGLGTGLGRSVGSGLAGSALDDQILMGRRVSVDAGLGGKGQGLGYKDSQLRDPLRRSDDHLPPDASNTLFVEGLPPKCTRREAAHIFRPFVGFKEVRLVNKEARNPGGEPLVLCFVDFANPNCAATAMEALQGYKFDENERDSPSLKLQFARYPGPRGGGDDYRRR*

Protein Length: 259

Fln nts: GCAGCAGGCTATTACGAGAAGCGGGGTTTAGGGTTTTAGGCGCCCACGGTACCTTCATTTGGGACCGCAAAGTAGATATTCAGTTTTGGAGTGCTCAGCGCTAAAGTAAACA_-_ATGGCAGATACCTACTGGAACAGATTCGCAGCTGAGAGGGACGGCCGCTCTGCGGCTCTTGCCTCTGCGGCCAAGCGTCCCCGCAATGAATACGATCTTTTGACTTCTGGAAGCCGTGATGGACCTGGTTATCTTCCCCGAGAAGACCCCCGACTTGATGATAGAAGTCGGCGCTTATTGAGGGAAACGGATCCCCTTGGACCTGCTTATGATCGCTATGTTCGAAATGGGCTTTCTTCATATGGTTCAAGTGGATTAAATGCAGGAGACCTTGGTGGTCTAGGAACTGGGCTTGGTAGATCGGTTGGTAGTGGCTTAGCTGGTTCAGCCTTGGATGATCAGATTTTAATGGGGCGTAGAGTGAGTGTGGATGCGGGCCTTGGGGGAAAAGGCCAAGGGCTGGGTTACAAGGATAGCCAGCTTAGAGATCCGTTGAGGAGGTCCGATGATCATCTACCACCAGATGCGTCCAACACCCTCTTTGTTGAGGGCCTCCCACCTAAGTGCACTCGCAGAGAAGCAGCTCACATATTCCGCCCTTTTGTTGGTTTCAAGGAAGTTAGGCTTGTAAACAAGGAGGCCAGAAATCCTGGAGGAGAGCCTCTTGTTCTATGTTTTGTGGACTTTGCTAATCCAAACTGTGCGGCAACTGCAATGGAAGCTCTCCAAGGCTATAAGTTTGATGAGAATGAGAGAGACTCACCTAGTCTGAAGTTGCAATTTGCACGTTATCCCGGTCCAAGGGGGGGTGGCGATGACTATCGTCGACGTTAA___TTTAACAGATGGTTTCGGCTGTTGGCTATTAGAACAATTTTGAAGGTGCAAGTATTGGATTGATAATCTATATGGATAATACACATCCTAGTCTTACATGGAAACGTCTTTGGTTTAGATAAATGGCATTGACCATTGTATTGCAGATGAGATTTTGGAGTTTAGGGTTGTTTTTATGCTTTGAGAACTAGCTGCAGGAACTTTTGTGTAACAATGGCAGTTGTAATAGACTTGTTTGTGGTA

Fln Alignment:

mc_euler_4850___MADTYWNRFAAERDGRSAALASAAKRPRNEYDLLTSGSRDGPGYXXXXXXXXXXXXXXXXXXXDPLGPAYDRYVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGSALDDQILMGRRVSVDAXXXXXXXXXGYKDSQLRDPLRRSD-DHLPPDASNTLFVEGLPPKCTRREAAHIFRPFVGFKEVRLVNKEARNPGGEPLVLCFVDFANPNCAATAMEALQGYKFDENERDSPSLKLQFA
A9NN64_______________MGDTYWNRFAAERDGRSAALASAAKRPRNEYDLLTSGSRDGPGYLPREDPRLDERSRRLLRETDPLGPAYERYARNGLPSYGSSGLNAGDLGGLGMGLGRSAGSGLGGSALDDQVLMGRRLSMDAGLGGKGQGLGFKDSQLRDPLRRPDNDHLPPDASNTLFVEGLPPKCTRREAAHIFRPFVGFKEVRLVNKEARNPGGEPLVLCFVDFANPNCAATAMEALQGYKFDENEKESPSLKLQFA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain