SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86384

Length: 435 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86384
GGGGAGGAATTCTCCATTTTCCCCTGGCTACAGGCCCCTGTTTTACATGAGAACTAATAATGTCACTGACAAGCTAACTTCCATAATGAATGACAAGAATGCGAAGTCAAAGATAGTAATTCCTAGGGACCGTGTGAAGATGGTTGTCGATTTGAGAAATGTAGTACCATGTCAACATGGTATGAGATTTGTTATTAGGGAGCGGGGTAAGACCGTTGGTGTTGGTGTTATTCAATCCATCATCGAGTAGGAAAAGAAATGTGAGATTATTTTCTGCTTGAAAATTTCTTCCACGTTTGTTGTTATTTGAGTCCATAATGTCTTATTTTTGAAGTAAAAAATTATTCTTGGAGGTACTGGTGACTGATTTTGTCACATTGGTTGCTTCTCCACATTCATAATATATTTTTGTAATGATTTTAAAGTAGAACTAGA

Ace file of the UniGene sp_v2.0_unigene86384 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to Elongation factor Tu, chloroplastic n=1 Tax=Vitis vinifera RepID=UPI00019851E8	-	-	2.0e-23	69%
FL-Next	sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	elongation factor chloroplastic-like	-	-	8.04526e-27	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	8.04526e-27	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFTu/EF1A, bacterial/organelle	IPR004541	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWL9

Fln msg: your sequence is shorter than subject: 83 - 490

Fln protein: GRNSPFSPGYRPLFYMRTNNVTDKLTSIMNDKNAKSKIVIPRDRVKMVVDLRNVVPCQHGMRFVIRERGKTVGVGVIQSIIE*

Protein Length: 84

Fln nts: GGGGAGGAATTCTCCATTTTCCCCTGGCTACAGGCCCCTGTTTTACATGAGAACTAATAATGTCACTGACAAGCTAACTTCCATAATGAATGACAAGAATGCGAAGTCAAAGATAGTAATTCCTAGGGACCGTGTGAAGATGGTTGTCGATTTGAGAAATGTAGTACCATGTCAACATGGTATGAGATTTGTTATTAGGGAGCGGGGTAAGACCGTTGGTGTTGGTGTTATTCAATCCATCATCGAGTAG___GAAAAGAAATGTGAGATTATTTTCTGCTTGAAAATTTCTTCCACGTTTGTTGTTATTTGAGTCCATAATGTCTTATTTTTGAAGTAAAAAATTATTCTTGGAGGTACTGGTGACTGATTTTGTCACATTGGTTGCTTCTCCACATTCATAATATATTTTTGTAATGATTTTAAAGTAGAACTAGA

Fln Alignment:

mc_euler_3648___GRNSPFSPGYRPLFYMRTNNVTDKLTSIMNDKNAKSKIVIPRDRVKMVVDLRNVVPCQHGMRFVIRERGKTVGVGVIQS
A9NWL9_______________GRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELITAVACEQGMRFAIREGGKTVGAGVIQA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain