SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86371

Length: 1151 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene86371 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rna-dependent RNA polymerase n=1 Tax=Populus trichocarpa RepID=B9IKW9_POPTR	-	-	58%
FL-Next	sp=RNA-dependent RNA polymerase 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	57%
Blast2go	rna-dependent rna polymerase 6	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	carpel development	GO:0048440	Biological Process	72%
Blast2go	production of miRNAs involved in gene silencing by miRNA	GO:0035196	Biological Process	72%
Blast2go	virus induced gene silencing	GO:0009616	Biological Process	72%
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	72%
Blast2go	leaf development	GO:0048366	Biological Process	72%
Blast2go	recognition of pollen	GO:0048544	Biological Process	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	RNA-dependent RNA polymerase, eukaryotic-type	IPR007855	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SG02

Fln msg: your sequence is shorter than subject: 369 - 1196

Fln protein: ILEAVDAPSLHHLVDCLVFPQKGDRPHPNEASGSDLDGDTYFVSWDSSLLPPSGKSFEPMDYDAGEAKVSKAPVKTQDIIEFFVQHMVNDKLGVICNAHVVHADLSEIGALDEKCLELAKLAAMAVDFPKTGKVAVLPPHLKPKIYPDFMDKDDFDGYKSDKVLGVLYRRIKDMFGEEVEKWKINAECENVFEELPYDKDLETRGFEEYLEEAWNYKCSYDQQLRALLGQFNVKREGEVVTGRISTLSKLNSRKQGEIKERLQHAYRALRNEFRFIFQGKTDRETPEPCKRSEYEAKASAWYHVTYHPTWVQKARELTEPDGYFTSPLLSFPWISVDYLAQIKLQKLCPNVDYSSRVKNFTTVLFGKA*

Protein Length: 370

Fln nts: GGATTCTAGAAGCTGTGGATGCTCCTAGCTTGCATCATTTAGTTGATTGTTTGGTATTCCCACAGAAGGGCGACAGGCCACATCCCAATGAAGCTTCTGGAAGTGATCTTGATGGAGATACATACTTTGTTTCTTGGGACTCTAGCCTTCTACCCCCAAGTGGCAAAAGTTTCGAACCAATGGATTATGATGCAGGTGAAGCAAAAGTATCAAAAGCACCAGTCAAAACTCAGGACATTATTGAATTTTTTGTGCAACACATGGTGAATGATAAGTTGGGTGTTATCTGTAATGCCCATGTTGTTCATGCAGATTTAAGTGAAATTGGTGCCTTAGATGAAAAATGTCTTGAACTTGCAAAGTTGGCAGCCATGGCTGTTGATTTCCCTAAAACAGGAAAAGTGGCAGTATTGCCTCCCCATCTAAAACCTAAGATATATCCCGATTTCATGGATAAAGATGACTTCGATGGTTACAAATCAGATAAGGTTTTGGGTGTTTTGTATAGGAGAATCAAGGATATGTTTGGGGAAGAGGTAGAAAAATGGAAAATTAATGCCGAATGTGAGAATGTATTTGAAGAACTTCCTTATGATAAAGATTTGGAAACTCGTGGATTTGAGGAATATCTCGAAGAAGCTTGGAACTACAAGTGTTCATATGATCAACAGCTTCGTGCTTTGTTAGGCCAATTCAACGTTAAAAGAGAGGGGGAAGTCGTCACTGGACGCATTTCCACTCTCTCCAAACTTAATAGCAGGAAGCAGGGCGAAATCAAAGAAAGACTGCAGCATGCTTACAGGGCTTTAAGAAATGAGTTTCGGTTCATTTTTCAAGGAAAAACAGATCGTGAAACTCCTGAACCCTGCAAACGGTCTGAATATGAAGCCAAAGCATCTGCGTGGTACCATGTAACGTATCATCCAACATGGGTGCAGAAGGCCAGGGAACTAACAGAACCAGATGGTTATTTCACTTCTCCTCTTCTGAGCTTTCCATGGATTTCTGTTGATTATTTGGCCCAGATAAAGTTGCAAAAGCTCTGCCCAAATGTAGATTATAGTTCGAGAGTCAAAAACTTTACGACTGTTCTGTTTGGTAAAGCATAA___TGGCCGAGTAAGTTTTCTTGCTTTCTTCTGTAGGTAGTAAAA

Fln Alignment:

mc_euler_3444___ILEAVDAPSLHHLVDCLVFPQKGDRPHPNEASGSDLDGDTYFVSWDSSLLPPSGKSFEPMDYDAGEAKVSKAPVKTQDIIEFFVQHMVNDKLGVICNAHVVHADLSEIGALDEKCLELAKLAAMAVDFPKTGKVAVLPPHLKPKIYPDFMDKDDFDGYKSDKVLGVLYRRIKDMFGEEVEKWKINAECENVFEELPYDKDLETRGFEEYLEEAWNYKCSYDQQLRALLGQFNVKREGEVVTGRISTLSKLNSRKQGEIKERLQHAYRALRNEFRFIFQGK-TDRET-PEPCKRSEYEAKASAWYHVTYHPTWVQKARELTEPDGYFTSPLLSFPWISVDYLAQIKLQ
Q9SG02_______________ILEAVDVPQLHHMYDCLIFPQKGDRPHTNEASGSDLDGDLYFVAWDQKLIPPNRKSYPAMHYDAAEEKSLGRAVNHQDIIDFFARNLANEQLGTICNAHVVHADRSEYGAMDEECLLLAELAATAVDFPKTGKIVSMPFHLKPKLYPDFMGKEDYQTYKSNKILGRLYRRVKEVYDEDAE---ASSEESTDPSAIPYDAVLEIPGFEDLIPEAWGHKCLYDGQLIGLLGQYKVQKEEEIVTGHIWSMPKYTSKKQGELKERLKHSYNSLKKEFRKVFEETIPDHENLSEEEKNILYEKKASAWYHVTYHPEWVKKSLELQDPDESSHAAMLSFAWIAADYLARIKIR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain