SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86332

Length: 520 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86332
AATGGTAACTCCTAGGTTTTCAAATTTTCCATATTTATTTGACTGATGCAGCATGAAATAGTAATCATTGTCAGGAACTTAGCTTAAAGTATCTTTTTTCAGATGAAAAAATGCTGATTTATATAAGCTCAAAATATTCCTTACTTGAACACTTATTAGTAATAAAATTATTGACTATCCTATTGAATTCCAATGGATGGTAGAGGGCAGTGGCCATCTTATTTTAGAATCCTTGAAAGTTAATCATTGTACTCTTACATCTTATTCGACTATACCTTTTACTGAGAAGTTTTAGAGGGACATATATTTGTAGTGATTGTGATCTAGAAATGAACAGTCACTGCAGAGGTAAGGAAGTTAAACAGAAACTTATGAATGTTTACATTTGACTTTATTACAGAATTCTCTGTGACTATGGAAGCCAAAACATGACTGTGAAAGTAGACAAAAGCAGTAAATATCCAGACTATCTTGCTGTCCAGTTTTTGTATCAAGGAGGCCAAACAGACATTACAGAGGT

Ace file of the UniGene sp_v2.0_unigene86332 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Expansin-like protein n=1 Tax=Cunninghamia lanceolata RepID=A2ICD7_CUNLA	-	-	1.0e-09	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	expansin-like protein	-	-	7.40636e-16	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	7.40636e-16	84%
Blast2go	membrane	GO:0016020	Cellular Component	7.40636e-16	84%

Source	InterPros	Term	Type	Identity
Sma3		IPR005132	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMA2

Fln msg: Distance to subject end: 91 aas, atg_distance in limit (1-15): atg_distance = 11, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 43 - 274

Fln protein: LYYRILCDYGSQNMTVKVDKSSKYPDYLAVQFLYQGGQTDITE

Protein Length: 44

Fln nts: AATGGTAACTCCTAGGTTTTCAAATTTTCCATATTTATTTGACTGATGCAGCATGAAATAGTAATCATTGTCAGGAACTTAGCTTAAAGTATCTTTTTTCAGATGAAAAAATGCTGATTTATATAAGCTCAAAATATTCCTTACTTGAACACTTATTAGTAATAAAATTATTGACTATCCTATTGAATTCCAATGGATGGTAGAGGGCAGTGGCCATCTTATTTTAGAATCCTTGAAAGTTAATCATTGTACTCTTACATCTTATTCGACTATACCTTTTACTGAGAAGTTTTAGAGGGACATATATTTGTAGTGATTGTGATCTAGAAATGAACAGTCACTGCAGAGGTAAGGAAGTTAAACAGAAACTTATGAATGTTTACATTTGACTTTATTACAGAATTCTCTGTGACTATGGAAGCCAAAACATGACTGTGAAAGTAGACAAAAGCAGTAAATATCCAGACTATCTTGCTGTCCAGTTTTTGTATCAAGGAGGCCAAACAGACATTACAGAGGT

Fln Alignment:

mc_euler_2333___YYRILCDYGSQNMTVKVDKSSKYPDYLAVQFLYQGGQTDIT
A9NMA2_______________YKRIPCEYGGQNMTVKVDKSSKYPDYLAVQFLYQGGQTDIT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain