SustainPineDB

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Assembly info
Unigenes
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SSRs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86323

Length: 455 nt

UniGene Fasta

>sp_v2.0_unigene86323
ACGCTCTTCTTGGCAATAAGTGGGCTCTGATAGCTGGTCGTTTGCCCGGTCGAACAGACAACGAGATCAAGAATTACTGGAACTCGCATCTGAAGAGAAGGCTTATCAGCATGGGCGTTGATCCCCTGACGCACCGTCCTTTTCAAAAGATTTCTCGCCATGACCAGTCGCTTTCGGAGAACGTCAGCGAGCCCGAAATAGCAAGTTCACGTAAATTCGTTCAAGATTTCTTTCACTGCCCGTCCGAATTAAGCGTCGAGTCCGCGCAACTTTCAAATGCGGCAGGCGGATCACTAGCGAGAGATGGGCAGCCCGTCCTCAACCTAAACCTCGACCTGGGGCTGACAGTAACCTGCCCCTCAATCCACGCAGAAGGGAAGCAGAACGTTGTTAATTCTGAGCAAGGCGAAAACGATCTCGGTGAGGGAAAGGGATATTTAGCATATCATTCCGCA

Ace file of the UniGene sp_v2.0_unigene86323

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	R2R3-MYB transcription factor MYB22 (Fragment) n=1 Tax=Pinus taeda RepID=C0JTE2_PINTA	-	-	1.00053e-42	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	protein	-	-	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Myb transcription factor	IPR015495	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTK0

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 151 - 242

Fln protein: ALLGNKWALIAGRLPGRTDNEIKNYWNSHLKRRLISMGVDPLTHRPFQKISRHDQSLSENVSEPEIASSRKFVQDFFHCPSELSVESAQLSNAAGGSLARDGQPVLNLNLDLGLTVTCPSIHAEGKQNVVNSEQGENDLGEGKGYLAYHSA

Protein Length: 152

Fln nts: ACGCTCTTCTTGGCAATAAGTGGGCTCTGATAGCTGGTCGTTTGCCCGGTCGAACAGACAACGAGATCAAGAATTACTGGAACTCGCATCTGAAGAGAAGGCTTATCAGCATGGGCGTTGATCCCCTGACGCACCGTCCTTTTCAAAAGATTTCTCGCCATGACCAGTCGCTTTCGGAGAACGTCAGCGAGCCCGAAATAGCAAGTTCACGTAAATTCGTTCAAGATTTCTTTCACTGCCCGTCCGAATTAAGCGTCGAGTCCGCGCAACTTTCAAATGCGGCAGGCGGATCACTAGCGAGAGATGGGCAGCCCGTCCTCAACCTAAACCTCGACCTGGGGCTGACAGTAACCTGCCCCTCAATCCACGCAGAAGGGAAGCAGAACGTTGTTAATTCTGAGCAAGGCGAAAACGATCTCGGTGAGGGAAAGGGATATTTAGCATATCATTCCGCA

Fln Alignment:

mc_euler_2157___ALLGNKWALIAGRLPGRTDNEIKNYWNSHLKRRLISMGVDPLTHRPFQKISRHDQSLSENVSEPEIASSRKFVQDFFHCPSELSVESAQLSNAAGGSLARDGQPVLNLNLDLGLTVTCPSIHAEGKQNVVNSEQGENDLGEGKGYLAYH
A9NTK0_______________ALLGNRWSLIAGRLPGRTDNEIKNYWNSYLKRKLISMGVDPLNHRPFQKNSRHRPSASGNVGEPGTAQSREIVPDFFHCPPELSTKSEQVSDAASG-LARKELPRFNLNLNLELSITRPSIHAAGKEAVVNSEQGESSLSEGKGYLCRH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain