SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86174

Length: 262 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86174
TGCTTTTGGAAATGGACCAAACTGAGGTTTTGCATCTGCTTGAATCTCCTGAGGCCTTGAAGGCAAAGGTCACTGAAGCGATGGATGTTTTGTTCAATTTGAACAAGAGGAATCAGCACAGAATGCGATAGATAAGTTGAATGGCATGCTGATGAATGACAAACAGGTCTATGTTGGCCCCTTTTTGCGGAGACAGGAAAGAGAGCAAAGTAATGGAGGGGCCAAGTTTTGTAATGTATATGTTAAGAATTTGTCAGACATT

Ace file of the UniGene sp_v2.0_unigene86174 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Poly(A)-binding protein n=1 Tax=Glycine max RepID=Q00M91_SOYBN	-	-	5.0e-18	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	poly -binding protein	-	-	4.0947e-23	83%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Polyadenylate-binding protein/Hyperplastic disc protein	IPR002004	-	-
Sma3	Paraneoplastic encephalomyelitis antigen	IPR002343	-	-
Sma3	Transferase	IPR003480	-	-
Sma3	Polyadenylate binding protein, human types 1, 2, 3, 4	IPR006515	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9S1

Fln msg: your sequence is shorter than subject: 43 - 313

Fln protein: LLEMDQTEVLHLLESPEALKAKVTEAMDVLFNLNKRNQHRMR*

Protein Length: 44

Fln nts: TGCTTTTGGAAATGGACCAAACTGAGGTTTTGCATCTGCTTGAATCTCCTGAGGCCTTGAAGGCAAAGGTCACTGAAGCGATGGATGTTTTGTTCAATTTGAACAAGAGGAATCAGCACAGAATGCGATAG___ATAAGTTGAATGGCATGCTGATGAATGACAAACAGGTCTATGTTGGCCCCTTTTTGCGGAGACAGGAAAGAGAGCAAAGTAATGGAGGGGCCAAGTTTTGTAATGTATATGTTAAGAATTTGTCAGACATT

Fln Alignment:

biogeco3_euler_22276___LLEMDQTEVLHLLESPEALKAKVTEAMDVLFNLNK
D5A9S1_______________LLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVTQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain