SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86162

Length: 475 nt

UniGene Fasta

>sp_v2.0_unigene86162
AGGCCAGAATTATGCCTTTCACAGATGATTGTTCTATTGTAAGCTGTGCTGCAGATGGACAGGTAAGGCTTAGTCAACTGCAGGAGGGAGGCCACGTTGACACAAGAAGGATAGGAAAGCACCGGGACCGTGCTCATAAACTTTGATTTGAGAACCCAAAGTCCAACCAAAGTATTTACCTGCCACGCTTTTGGTGCAAACAAGTCAAGCCATTCTGCTATTGTGCGGCTTAATGCAATTGTGATAGATCCTAGGAATCCAAACTGTTTTGCTATTGGTGGTTCTGATGAATATGCTCGTGTTTATGACATTCGGAATTATCACTGGGATGCATCAACCAATGAAGATCGGCCAGTAGATTCATTCTCGCCTCGTCACCTGATTGGCAATGACCGGGTTAACATAACAGGTCTGGCTTATTCTAACCAAGGTGAATTACTTGCTTCATATAATGATGAGCTCATTTACTTGTTTC

Ace file of the UniGene sp_v2.0_unigene86162

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative WD-40 repeat protein [Oryza sativa Japonica Group]	-	-	9.00054e-42	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%
Blast2go	ddb1- and cul4-associated factor 8-like	-	-	1.4013e-45	73%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I0X5

Fln msg: Warning!, your query overlaps and the subject is separated, Distance to subject end: 212 aas, your sequence is shorter than subject: 158 - 507

Fln protein: ARIMPFTDDCSIVSCAADGQVRLSQLQEGGHVDTRRIGKHRDRAHxxxxxxTQSPTKVFTCHAFGANKSSHSAIVRLNAIVIDPRNPNCFAIGGSDEYARVYDIRNYHWDASTNEDRPVDSFSPRHLIGNDRVNITGLAYSNQGELLASYNDELIYLF

Protein Length: 159

Fln nts: AGGCCAGAATTATGCCTTTCACAGATGATTGTTCTATTGTAAGCTGTGCTGCAGATGGACAGGTAAGGCTTAGTCAACTGCAGGAGGGAGGCCACGTTGACACAAGAAGGATAGGAAAGCACCGGGACCGTGCTCATxxxxxxxxxxxxxxxxxxACCCAAAGTCCAACCAAAGTATTTACCTGCCACGCTTTTGGTGCAAACAAGTCAAGCCATTCTGCTATTGTGCGGCTTAATGCAATTGTGATAGATCCTAGGAATCCAAACTGTTTTGCTATTGGTGGTTCTGATGAATATGCTCGTGTTTATGACATTCGGAATTATCACTGGGATGCATCAACCAATGAAGATCGGCCAGTAGATTCATTCTCGCCTCGTCACCTGATTGGCAATGACCGGGTTAACATAACAGGTCTGGCTTATTCTAACCAAGGTGAATTACTTGCTTCATATAATGATGAGCTCATTTACTTGTTTC

Fln Alignment:

biogeco3_euler_20992___ARIMPFTDDCSIVSCAADGQVRLSQLQEGGHVDTRRIGKHRDRAHKL*FExxxxxxxxxxxxxxxxxNFDLRTQSPTKVFTCHAFGANKSSHSAIVRLNAIVIDPRNPNCFAIGGSDEYARVYDIRNYHWDASTNEDRPVDSFSPRHLIGNDRVNITGLAYSNQGELLASYNDELIYLF
F6I0X5_______________AKFMPYTDDRSIVTCAADGQVRRAQILESGRVETTLLAKHQGRAHKLAIExxxxxxxxxxxxxxxxxHIDLRSRAATELLTCHQIEERRRGLRAVVQLNAIAIDPRNSNLFAVAGSDEYARLYDIRKYKWDGSTDFDQPIDFFCPSHLIGNPYVGITGLSFSDQRELLVSYNDEFIYLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain