SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86141

Length: 571 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene86141
TGAGCCATCACCGGCAGCCAACTTCTGATGCCAAGAATCCGCAGACAGATGGAGTGAAAAGATGGAGTGTAACAGAAGGCAAAGATGTCACAGAAGAGTTGCTAAGTGCCAAGTCTCTTACAAGGCAGTTGGGGATCAGATGACCCTTGCTAAAGCATATGTTGTCATTGCAAAAGAAAACAACAATTTGCAACTTGCCTTGAGACATTTCACCGGTACCATAAATATCTCAATTTCTCCCACCCCATGATTCGTTCTCACTTTGATGCAGATGCTTGTGGATGGGCCTTTGGGATGAATGTGTTTGACCTTGTTACATGGAAGAAGCTCAATGTTACAAGCCGATATCACTATTGGCAAGAGCAGAATGTTGATAGGACACTTTGGAAACTTGGGACTTTGCCTCCAGGCTTGCTTACCTTCTATGGTCTCACTGAGCCACTTGATCGTCGTTGGCATATACTAGGCCTAGGTTATGATCCAAATGTGGACATGCAACTGATAGAAAGTGGAGCTGTTTTGCATTATAATGGGAACATGAAACCATGGTTGAAACTGGCAATGAACAGGT

Ace file of the UniGene sp_v2.0_unigene86141 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=2 Tax=Selaginella moellendorffii RepID=D8RE39_SELML	-	-	77%
FL-Next	sp=Probable galacturonosyltransferase 11; Arabidopsis thaliana (Mouse-ear cress).	-	-	71%
Blast2go	cazy family gt8	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glycosyl transferase, family 8	IPR002495	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q949Q1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 22 aas, your sequence is shorter than subject: 190 - 537

Fln protein: *AITGSQLLMPRIRRQME*KDGV*QKAKMSQKSC*VPSLLQGSWGSDDPC*SICCHCKRKQQFATCLETFHRYHKYLNFSHPMIRSHFDADACGWAFGMNVFDLVTWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNMKPWLKLAMNR

Protein Length: 191

Fln nts: TGAGCCATCACCGGCAGCCAACTTCTGATGCCAAGAATCCGCAGACAGATGGAGTGAAAAGATGGAGTGTAACAGAAGGCAAAGATGTCACAGAAGAGTTGCTAAGTGCCAAGTCTCTTACAAGGCAGTTGGGGATCAGATGACCCTTGCTAAAGCATATGTTGTCATTGCAAAAGAAAACAACAATTTGCAACTTGCCTTGAGACATTTCACCGGTACCATAAATATCTCAATTTCTCCCACCCCATGATTCGTTCTCACTTTGATGCAGATGCTTGTGGATGGGCCTTTGGGATGAATGTGTTTGACCTTGTTACATGGAAGAAGCTCAATGTTACAAGCCGATATCACTATTGGCAAGAGCAGAATGTTGATAGGACACTTTGGAAACTTGGGACTTTGCCTCCAGGCTTGCTTACCTTCTATGGTCTCACTGAGCCACTTGATCGTCGTTGGCATATACTAGGCCTAGGTTATGATCCAAATGTGGACATGCAACTGATAGAAAGTGGAGCTGTTTTGCATTATAATGGGAACATGAAACCATGGTTGAAACTGGCAATGAACAGGT

Fln Alignment:

biogeco3_euler_19249___PC*SICCHCKRKQQFATCLETFHRYHKYLNFSHPMIRSHFDADACGWAFGMNVFDLVTWKKLNVTSRYHYWQEQNVDRTLWKLGTLPPGLLTFYGLTEPLDRRWHILGLGYDPNVDMQLIESGAVLHYNGNMKPWLKLAMNR
Q949Q1_______________PLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPLISSKFDPQACGWAFGMNVFDLIAWRNANVTARYHYWQDQNRERTLWKLGTLPPGLLSFYGLTEPLDRRWHVLGLGYDVNIDNRLIETAAVIHYNGNMKPWLKLAIGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain