SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86135

Length: 568 nt

UniGene Fasta

>sp_v2.0_unigene86135
AAGCATGATACAATGATGGAGAGCCTTTCTACGCAGACACTCCCTCGACCTATTGATCGGACGATGGGAGATGCAGTTCAGTTGGAGAGGATTGAAGAACTTGAAACGCTTTCGAAAGTTGGTTTGTTTATTGAATCCGACCGTAACTCGCAACACATAAGCAGAGGAGCGCATAAAGAAAGGGTTAGAGCCTGAGAATATTGACAAGGAGTTCTTGCGTCTGTGGTTCCGTAACAATTGTGACCCTTATAAAGATGAGGTTTTACCAGATGCTCCACGTGAACTTGTTTCCGAGCTTGCTTGGCGCTATATTTTCCTATATGAAACAATAACAGGCTTAAAGTTTGATCTACCAGAGTTGAAGGAGTCAAAACATGAGCGTATCACAAGAAATGTTTCACAGGCAGTATTGCATCATTAATACTCTTTCTTGTGTAAAAAGGCCAAACAAGATTTGCCTGGGAGATTTTGTATGCATTGTTTGCATGTGCAAAGGTCCGCAAGTGCATGCATTTAATGAAGGGATCTGAGTTTTAAATATGACCTGCAGTGTCTCAAATGCTACATT

Ace file of the UniGene sp_v2.0_unigene86135

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Nicotiana tabacum RepID=Q6T7F0_TOBAC	-	-	3.0e-30	73%
FL-Next	sp=Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	70%
Blast2go	phosphoribosylaminoimidazole-succinocarboxamide synthase	-	-	1.16434e-36	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoribosylaminoimidazolesuccinocarboxamide synthase.	EC:6.3.2.6	-	1.16434e-36	86%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	1.16434e-36	86%
Blast2go	Metabolic pathways	01100	1.16434e-36	86%
Blast2go	Biosynthesis of secondary metabolites	01110	1.16434e-36	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	purine nucleotide biosynthetic process	GO:0006164	Biological Process	1.16434e-36	86%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	1.16434e-36	86%
Blast2go	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	GO:0004639	Molecular Function	1.16434e-36	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	1.16434e-36	86%

Source	InterPros	Term	Type	Identity
Sma3	SAICAR synthetase	IPR001636	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3	SAICAR synthetase, conserved site	IPR018236	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P38025

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 140 - 411

Fln protein: SMIQ*WRAFLRRHSLDLLIGRWEMQFSWRGLKNLKRFRKLVCLLNPTVTRNT*AEERIKKGLEPENIDKEFLRLWFRNNCDPYKDEVLPDAPRELVSELAWRYIFLYETITGLKFDLPELKESKHERITRNVSQAVLHH*

Protein Length: 141

Fln nts: AAGCATGATACAATGATGGAGAGCCTTTCTACGCAGACACTCCCTCGACCTATTGATCGGACGATGGGAGATGCAGTTCAGTTGGAGAGGATTGAAGAACTTGAAACGCTTTCGAAAGTTGGTTTGTTTATTGAATCCGACCGTAACTCGCAACACATAAGCAGAGGAGCGCATAAAGAAAGGGTTAGAGCCTGAGAATATTGACAAGGAGTTCTTGCGTCTGTGGTTCCGTAACAATTGTGACCCTTATAAAGATGAGGTTTTACCAGATGCTCCACGTGAACTTGTTTCCGAGCTTGCTTGGCGCTATATTTTCCTATATGAAACAATAACAGGCTTAAAGTTTGATCTACCAGAGTTGAAGGAGTCAAAACATGAGCGTATCACAAGAAATGTTTCACAGGCAGTATTGCATCATTAA___TACTCTTTCTTGTGTAAAAAGGCCAAACAAGATTTGCCTGGGAGATTTTGTATGCATTGTTTGCATGTGCAAAGGTCCGCAAGTGCATGCATTTAATGAAGGGATCTGAGTTTTAAATATGACCTGCAGTGTCTCAAATGCTACATT

Fln Alignment:

biogeco3_euler_18931___EERIKKGLEPENIDKEFLRLWFRNNCDPYKDEVLPDAPRELVSELAWRYIFLYETITGLKFDLPELKESKHERITRNVSQAV
P38025_______________EERFQKGLEPENVDKEFLRLWFKENCNPYEDEVLPAAPAELVTELAWRYIFLYETITGSRIDIIPTQEPIHDRISRNTSQAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain