SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene86124

Length: 306 nt

UniGene Fasta

>sp_v2.0_unigene86124
TTTCTTCCTACAGTCACCAAGATTCCCTCTTTGATTTGAATCCGCGAGCTTCGACTCTTTGGAATGATGGACGAGATGTAGCAGGTTTTCGAGAAGAAGAGGATGCAAATCTAATATTTGGGGCTGTCATAGATAAATCATTCAGTGGTCAAGTCAGTATAACATTAATAGCAACAGGTTTTAAAGACCAGGATAAAGCAGAAGAGAACTTTGTGAAGAGTAAAAAGACACTACATGGAGATATTAACTCTGGGTTTTCACGTCATCCATCAATCCAAAACTATGGTTCCACAGTGGAGATACCTG

Ace file of the UniGene sp_v2.0_unigene86124

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	chloroplast FtsZ-like protein [Nicotiana tabacum]	-	-	1.0e-11	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	cell division protein ftsz homolog 2- chloroplastic-like	-	-	4.34216e-15	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast fission	GO:0010020	Biological Process	4.34216e-15	60%
Blast2go	identical protein binding	GO:0042802	Molecular Function	4.34216e-15	60%
Blast2go	thylakoid membrane	GO:0042651	Cellular Component	4.34216e-15	60%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	4.34216e-15	60%

Source	InterPros	Term	Type	Identity
Sma3	Cell division protein FtsZ	IPR000158	-	-
Sma3	Tubulin/FtsZ, GTPase domain	IPR003008	-	-
Sma3	Tubulin/FtsZ, 2-layer sandwich domain	IPR018316	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP13

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 101 - 572

Fln protein: SSYSHQDSLFDLNPRASTLWNDGRDVAGFREEEDANLIFGAVIDKSFSGQVSITLIATGFKDQDKAEENFVKSKKTLHGDINSGFSRHPSIQNYGSTVEIP

Protein Length: 102

Fln nts: TTTCTTCCTACAGTCACCAAGATTCCCTCTTTGATTTGAATCCGCGAGCTTCGACTCTTTGGAATGATGGACGAGATGTAGCAGGTTTTCGAGAAGAAGAGGATGCAAATCTAATATTTGGGGCTGTCATAGATAAATCATTCAGTGGTCAAGTCAGTATAACATTAATAGCAACAGGTTTTAAAGACCAGGATAAAGCAGAAGAGAACTTTGTGAAGAGTAAAAAGACACTACATGGAGATATTAACTCTGGGTTTTCACGTCATCCATCAATCCAAAACTATGGTTCCACAGTGGAGATACCTG

Fln Alignment:

biogeco3_euler_18099___SLFDLNPRASTLWNDGRDVAGFREEEDANLIFGAVIDKSFSGQVSITLIATGFKDQDKAEENFVK-SKKTLHGDINSGFSRHPSIQNYGSTVEIP
B8LP13_______________TLFEVNAAAEVIYD--------LVDPNANLIFGAVIDESLTGQVSITLIATGFKGQDAMEGKAAQGTRQFSYGDVNSGGSHGSSVPTNGATVEIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain